Author details

Full Name

Shawn M Gomez

Affiliation

ORCID

Career Start Year

1999

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36916682	Improving the American College of Surgeons NSQIP Surgical Risk Calculator with Machine Learning.		2023
38025707	Integrated single-dose kinome profiling data is predictive of cancer cell line sensitivity to kinase inhibitors.		2023
37994445	Prediction of Pathologic Complete Response for Rectal Cancer Based on Pre-treatment Factors Using Machine Learning.		2023
37577663	Combined kinome inhibition states are predictive of cancer cell line sensitivity to kinase inhibitor combination therapies.		2023
37563337	Analysis of Specimen Mammography with Artificial Intelligence to Predict Margin Status.		2023
37407899	Estimating Risk of Locoregional Failure and Overall Survival in Anal Cancer Following Chemoradiation: A Machine Learning Approach.		2023
37133432	Prediction of Ureteral Injury During Colorectal Surgery Using Machine Learning.		2023
37455158	Predicting readmission after bariatric surgery using machine learning.		2023
36945565	Computer Vision Analysis of Specimen Mammography to Predict Margin Status.		2023
36809237	Kinome inhibition states and multiomics data enable prediction of cell viability in diverse cancer types.		2023
37311893	Application of machine learning to predict postoperative gastrointestinal bleed in bariatric surgery.		2023
36538699	Improved Prediction of Surgical-Site Infection After Colorectal Surgery Using Machine Learning.		2023
35157015	EMBER: multi-label prediction of kinase-substrate phosphorylation events through deep learning.		2022
35508684	Differential Performance of Machine Learning Models in Prediction of Procedure-Specific Outcomes.	Journal of Gastrointestinal Surgery	2022
35563124	Direct Detection of Glutathione Biosynthesis, Conjugation, Depletion and Recovery in Intact Hepatoma Cells.	International Journal of Molecular Sciences	2022
36070116	Development and Validation of Machine Learning Models to Predict Readmission After Colorectal Surgery.	Journal of Gastrointestinal Surgery	2022
34510822	Stem/Proliferative and Differentiated Cells within Primary Murine Colonic Epithelium Display Distinct Intracellular Free Ca Signal Codes.	Advanced healthcare materials	2021
33079988	The Dark Kinase Knowledgebase: an online compendium of knowledge and experimental results of understudied kinases.	Nucleic Acids Res	2021
31572829	Recombination drives the evolution of mutational robustness.	Current Opinion in Systems Biology	2019
29643987	Proteomic analysis defines kinase taxonomies specific for subtypes of breast cancer.	Oncotarget	2018
30172842	Coral: Clear and Customizable Visualization of Human Kinome Data.	Cell Syst	2018
29351997	Spatiotemporal organization of exocytosis emerges during neuronal shape change.	Journal of Cell Biology	2018
29567993	Unexplored therapeutic opportunities in the human genome.	Nat Rev Drug Discov	2018
29472638	Unexplored therapeutic opportunities in the human genome.	Nat Rev Drug Discov	2018
28273454	MAP3K4 Controls the Chromatin Modifier HDAC6 during Trophoblast Stem Cell Epithelial-to-Mesenchymal Transition.	Cell Reports	2017
28634243	Erratum for Perkowski et al., "The EXIT Strategy: an Approach for Identifying Bacterial Proteins Exported during Host Infection".	mBio	2017
28442606	The EXIT Strategy: an Approach for Identifying Bacterial Proteins Exported during Host Infection.	mBio	2017
26020230	Visinets: a web-based pathway modeling and dynamic visualization tool.	PLoS ONE	2015
25749525	Transcriptome-wide identification and study of cancer-specific splicing events across multiple tumors.	Oncotarget	2015
25786072	Analysis of sphingosine kinase activity in single natural killer cells from peripheral blood.	Integrative Biology (United Kingdom)	2015
25865895	Two functionally distinct sources of actin monomers supply the leading edge of lamellipodia.	Cell Reports	2015
25865888	Inhibition of Lapatinib-Induced Kinome Reprogramming in ERBB2-Positive Breast Cancer by Targeting BET Family Bromodomains.	Cell Rep	2015
25071988	Automated analysis of invadopodia dynamics in live cells.	PeerJ	2014
25349262	LKB1 loss in melanoma disrupts directional migration toward extracellular matrix cues.	J Cell Biol	2014
24667216	Prevalent RNA recognition motif duplication in the human genome.	RNA	2014
25118278	Engineered kinase activation reveals unique morphodynamic phenotypes and associated trafficking for Src family isoforms.	Proceedings of the National Academy of Sciences of the United States of America	2014
24609359	Dissecting motility signaling through activation of specific Src-effector complexes.	Nature Chemical Biology	2014
23300967	Gleevec, an Abl family inhibitor, produces a profound change in cell shape and migration.	PLoS One	2013
24358855	The Focal Adhesion Analysis Server: a web tool for analyzing focal adhesion dynamics.	F1000Research	2013
23444376	Nck enables directional cell migration through the coordination of polarized membrane protrusion with adhesion dynamics.	Journal of Cell Science	2013
22385962	Arp2/3 is critical for lamellipodia and response to extracellular matrix cues but is dispensable for chemotaxis.	Cell	2012
22310242	Defining the expressed breast cancer kinome.	Cell Research	2012
22700804	Differential expression and cellular localization of novel isoforms of the tendon biomarker tenomodulin.	Journal of Applied Physiology	2012
22500798	Dynamic reprogramming of the kinome in response to targeted MEK inhibition in triple-negative breast cancer.	Cell	2012
22163177	A whole-body model for glycogen regulation reveals a critical role for substrate cycling in maintaining blood glucose homeostasis.	PLoS Computational Biology	2011
21358811	Mapping protein interactions between Dengue virus and its human and insect hosts.	PLoS Neglected Tropical Diseases	2011
21549327	MAP3K4/CBP-regulated H2B acetylation controls epithelial-mesenchymal transition in trophoblast stem cells.		2011
21779367	High-resolution quantification of focal adhesion spatiotemporal dynamics in living cells.	PLoS ONE	2011
20426868	Structural similarity-based predictions of protein interactions between HIV-1 and Homo sapiens.	Virology Journal	2010
20214818	Enhancing metabolomic data analysis with Progressive Consensus Alignment of NMR Spectra (PCANS).	BMC Bioinformatics	2010