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Author Details

Ruedi Aebersold
Institute of Molecular Systems Biology, ETH Zurich
1982
876
173
Trey Ideker (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37861398Proteomic Profiling of Advanced Melanoma Patients to Predict Therapeutic Response to Anti-PD-1 Therapy.Clin Cancer Res2024
37861398Proteomic Profiling of Advanced Melanoma Patients to Predict Therapeutic Response to Anti-PD-1 Therapy.Clin Cancer Res2024
36318223The 2022 Report on the Human Proteome from the HUPO Human Proteome Project.J Proteome Res2023
35802605Quantitative proteomic landscapes of primary and recurrent glioblastoma reveal a protumorigeneic role for FBXO2-dependent glioma-microenvironment interactions.Neuro Oncol2023
36318223The 2022 Report on the Human Proteome from the HUPO Human Proteome Project.J Proteome Res2023
37749212A computational framework for the inference of protein complex remodeling from whole-proteome measurements.Nat Methods2023
37833274Integrative solution structure of PTBP1-IRES complex reveals strong compaction and ordering with residual conformational flexibility.Nat Commun2023
36717752Integrated multi-omics reveals anaplerotic rewiring in methylmalonyl-CoA mutase deficiency.Nat Metab2023
37343696Proteomic Dynamics of Breast Cancer Cell Lines Identifies Potential Therapeutic Protein Targets.Mol Cell Proteomics2023
36515990Meiotic nuclear pore complex remodeling provides key insights into nuclear basket organization.J Cell Biol2023
36896621Phosphorylation-linked complex profiling identifies assemblies required for Hippo signal integration.Mol Syst Biol2023
36894640Correction: An oncogene addiction phosphorylation signature and its derived scores inform tumor responsiveness to targeted therapies.Cell Mol Life Sci2023
37188738A DNA-PK phosphorylation site on MET regulates its signaling interface with the DNA damage response.Oncogene2023
37058003Rapid Profiling of Protein Complex Reorganization in Perturbed Systems.J Proteome Res2023
37115669M. tuberculosis relies on trace oxygen to maintain energy homeostasis and survive in hypoxic environments.Cell Rep2023
36864200Initial recommendations for performing, benchmarking and reporting single-cell proteomics experiments.Nat Methods2023
36737588Enzyme expression kinetics by Escherichia coli during transition from rich to minimal media depends on proteome reserves.Nat Microbiol2023
37039310Recent advances of data-independent acquisition mass spectrometry-based proteomics.Proteomics2023
37485750Genetic effects on molecular network states explain complex traits.Mol Syst Biol2023
37485750Genetic effects on molecular network states explain complex traits.Mol Syst Biol2023
37749212A computational framework for the inference of protein complex remodeling from whole-proteome measurements.Nat Methods2023
37833274Integrative solution structure of PTBP1-IRES complex reveals strong compaction and ordering with residual conformational flexibility.Nat Commun2023
35802605Quantitative proteomic landscapes of primary and recurrent glioblastoma reveal a protumorigeneic role for FBXO2-dependent glioma-microenvironment interactions.Neuro Oncol2023
37188738A DNA-PK phosphorylation site on MET regulates its signaling interface with the DNA damage response.Oncogene2023
37058003Rapid Profiling of Protein Complex Reorganization in Perturbed Systems.J Proteome Res2023
37115669M. tuberculosis relies on trace oxygen to maintain energy homeostasis and survive in hypoxic environments.Cell Rep2023
37343696Proteomic Dynamics of Breast Cancer Cell Lines Identifies Potential Therapeutic Protein Targets.Mol Cell Proteomics2023
37039310Recent advances of data-independent acquisition mass spectrometry-based proteomics.Proteomics2023
36717752Integrated multi-omics reveals anaplerotic rewiring in methylmalonyl-CoA mutase deficiency.Nat Metab2023
36515990Meiotic nuclear pore complex remodeling provides key insights into nuclear basket organization.J Cell Biol2023
36737588Enzyme expression kinetics by Escherichia coli during transition from rich to minimal media depends on proteome reserves.Nat Microbiol2023
36896621Phosphorylation-linked complex profiling identifies assemblies required for Hippo signal integration.Mol Syst Biol2023
36864200Initial recommendations for performing, benchmarking and reporting single-cell proteomics experiments.Nat Methods2023
36894640Correction: An oncogene addiction phosphorylation signature and its derived scores inform tumor responsiveness to targeted therapies.Cell Mol Life Sci2023
34666007Multiomic profiling of the liver across diets and age in a diverse mouse population.Cell Syst2022
36180436Author Correction: Artificial intelligence defines protein-based classification of thyroid nodules.Cell Discov2022
36179048Novel biochemical, structural, and systems insights into inflammatory signaling revealed by contextual interaction proteomics.Proc Natl Acad Sci U S A2022
35907431Enzymatic nucleosome acetylation selectively affects activity of histone methyltransferases in vitro.Biochim Biophys Acta Gene Regul Mech2022
35899551Global and precise identification of functional miRNA targets in mESCs by integrative analysis.EMBO Rep2022
35581222Nucleotide-amino acid Ï¿-stacking interactions initiate photo cross-linking in RNA-protein complexes.Nat Commun2022
35574625The impact of genomic variation on protein phosphorylation states and regulatory networks.Mol Syst Biol2022
36068205Artificial intelligence defines protein-based classification of thyroid nodules.Cell Discov2022
35724564PCfun: a hybrid computational framework for systematic characterization of protein complex function.Brief Bioinform2022
36494469An oncogene addiction phosphorylation signature and its derived scores inform tumor responsiveness to targeted therapies.Cell Mol Life Sci2022
36480614Principles of gene regulation quantitatively connect DNA to RNA and proteins in bacteria.Science2022
35234500All Driven by Energy Demand? Integrative Comparison of Metabolism of Enterococcus faecalis Wildtype and a Glutamine Synthase Mutant.Microbiol Spectr2022
34666007Multiomic profiling of the liver across diets and age in a diverse mouse population.Cell Syst2022
35008095Proteomic identification of proliferation and progression markers in human polycythemia vera stem and progenitor cells.Blood Adv2022
35105883The mouse metallomic landscape of aging and metabolism.Nat Commun2022
35581222Nucleotide-amino acid Ï¿-stacking interactions initiate photo cross-linking in RNA-protein complexes.Nat Commun2022
  • 1 - 50 of 1,752

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Collaborators

Eric W Deutsch
Institute for Systems Biology
Co-authored papers 53
David R Goodlett
University of Victoria
Co-authored papers 47
Alexander Leitner
ETH Zurich
Co-authored papers 46
Jimmy K Eng
University of Washington
Co-authored papers 45
Ben C Collins
Queen's University of Belfast
Co-authored papers 40
Alexander Schmidt
Co-authored papers 36
Matthias Gstaiger
Institute of Molecular Systems Biology, ETH Zurich
Co-authored papers 35
Robert L Moritz
Institute for Systems Biology
Co-authored papers 31
Alexey I Nesvizhskii
University of Michigan ann arbor
Co-authored papers 29
Paola Picotti
Institute of Molecular Systems Biology, ETH Zurich
Co-authored papers 28
Steven P Gygi
Harvard Medical School
Co-authored papers 28
Ludovic Gillet
ETH Zurich
Co-authored papers 28
Yansheng Liu
Yale University School of Medicine
Co-authored papers 27
Tiannan Guo
Westlake University
Co-authored papers 27
Bernd Bodenmiller
University of Zurich
Co-authored papers 27
Bernd Wollscheid
ETH Zurich
Co-authored papers 27
Leroy Hood
Center for Phenomic Health, The Buck Institute for Research on Aging
Co-authored papers 26
Jeffrey A Ranish
Institute for Systems Biology
Co-authored papers 22
David S Campbell
Co-authored papers 22
Gilbert S Omenn
and School of Public Health, University of Michigan ann arbor
Co-authored papers 21
Olga Vitek
Khoury College of Computer Sciences, Northeastern University
Co-authored papers 19
Bruno Domon
Co-authored papers 19
Patrick G A Pedrioli
Institute of Translational Medicine, Swiss Federal Institute of Technology/ETH Zurich
Co-authored papers 17
Thomas Walzthoeni
Institute for Computational Biology
Co-authored papers 17
Lukas Reiter
Co-authored papers 16
Lukas N Mueller
Co-authored papers 15
Florian Stengel
University of Konstanz Universitatsstrasse 10
Co-authored papers 15
Ruth H??ttenhain
Quantitative Biosciences Institute (QBI), University of California san francisco
Co-authored papers 15
Anne-Claude Gingras
Lunenfeld-Tanenbaum Research Institute
Co-authored papers 14
Brian Raught
Princess Margaret Cancer Centre, University Health Network
Co-authored papers 13
Release 1.2