Author details

Full Name

Samantha Kuan

Affiliation

University of California San Diego

ORCID

Career Start Year

2010

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
38092917	Single-cell analysis of chromatin accessibility in the adult mouse brain.	Nature	2023
38092917	Single-cell analysis of chromatin accessibility in the adult mouse brain.	Nature	2023
34616068	An atlas of gene regulatory elements in adult mouse cerebrum.	Nature	2021
34616068	An atlas of gene regulatory elements in adult mouse cerebrum.	Nature	2021
31501517	A compendium of promoter-centered long-range chromatin interactions in the human genome.	Nat Genet	2019
31501517	A compendium of promoter-centered long-range chromatin interactions in the human genome.	Nat Genet	2019
29434377	Single-nucleus analysis of accessible chromatin in developing mouse forebrain reveals cell-type-specific transcriptional regulation.	Nat Neurosci	2018
29434377	Single-nucleus analysis of accessible chromatin in developing mouse forebrain reveals cell-type-specific transcriptional regulation.	Nat Neurosci	2018
29497140	Author Correction: Single-nucleus analysis of accessible chromatin in developing mouse forebrain reveals cell-type-specific transcriptional regulation.	Nat Neurosci	2018
29497140	Author Correction: Single-nucleus analysis of accessible chromatin in developing mouse forebrain reveals cell-type-specific transcriptional regulation.	Nat Neurosci	2018
27626377	Broad histone H3K4me3 domains in mouse oocytes modulate maternal-to-zygotic transition.	Nature	2016
27626377	Broad histone H3K4me3 domains in mouse oocytes modulate maternal-to-zygotic transition.	Nature	2016
25693566	Integrative analysis of haplotype-resolved epigenomes across human tissues.	Nature	2015
25693566	Integrative analysis of haplotype-resolved epigenomes across human tissues.	Nature	2015
26455392	EGFR Mutation Promotes Glioblastoma through Epigenome and Transcription Factor Network Remodeling.	Mol Cell	2015
26455392	EGFR Mutation Promotes Glioblastoma through Epigenome and Transcription Factor Network Remodeling.	Mol Cell	2015
25263596	5mC oxidation by Tet2 modulates enhancer activity and timing of transcriptome reprogramming during differentiation.	Mol Cell	2014
25409824	A comparative encyclopedia of DNA elements in the mouse genome.	Nature	2014
25263596	5mC oxidation by Tet2 modulates enhancer activity and timing of transcriptome reprogramming during differentiation.	Mol Cell	2014
25409824	A comparative encyclopedia of DNA elements in the mouse genome.	Nature	2014
23664764	Epigenomic analysis of multilineage differentiation of human embryonic stem cells.	Cell	2013
23664764	Epigenomic analysis of multilineage differentiation of human embryonic stem cells.	Cell	2013
22156296	Global DNA hypomethylation coupled to repressive chromatin domain formation and gene silencing in breast cancer.	Genome Res	2012
22889292	An encyclopedia of mouse DNA elements (Mouse ENCODE).	Genome Biol	2012
22763441	A map of the cis-regulatory sequences in the mouse genome.	Nature	2012
22156296	Global DNA hypomethylation coupled to repressive chromatin domain formation and gene silencing in breast cancer.	Genome Res	2012
22763441	A map of the cis-regulatory sequences in the mouse genome.	Nature	2012
22889292	An encyclopedia of mouse DNA elements (Mouse ENCODE).	Genome Biol	2012
21131980	An assessment of histone-modification antibody quality.	Nat Struct Mol Biol	2011
21493686	Distinct patterns of somatic alterations in a lymphoblastoid and a tumor genome derived from the same individual.	Nucleic Acids Res	2011
21131980	An assessment of histone-modification antibody quality.	Nat Struct Mol Biol	2011
21876557	Dynamic chromatin states in human ES cells reveal potential regulatory sequences and genes involved in pluripotency.	Cell Res	2011
21876557	Dynamic chromatin states in human ES cells reveal potential regulatory sequences and genes involved in pluripotency.	Cell Res	2011
21493686	Distinct patterns of somatic alterations in a lymphoblastoid and a tumor genome derived from the same individual.	Nucleic Acids Res	2011
20452322	Distinct epigenomic landscapes of pluripotent and lineage-committed human cells.	Cell Stem Cell	2010
21108794	Systematic detection of putative tumor suppressor genes through the combined use of exome and transcriptome sequencing.	Genome Biol	2010
20452322	Distinct epigenomic landscapes of pluripotent and lineage-committed human cells.	Cell Stem Cell	2010
21108794	Systematic detection of putative tumor suppressor genes through the combined use of exome and transcriptome sequencing.	Genome Biol	2010

1 - 38 of 38

Yupeng He

Salk Institute for Biological Studies

Career Start Year 2012

Number of shared co-authors 26

Hao Wang

Altius Institute for Biomedical Sciences

Career Start Year 2012

Number of shared co-authors 29

Kai Zhang

University of California

Career Start Year 2011

Number of shared co-authors 5

Muhammad B Ekram

Louisiana State University

Career Start Year 2011

Number of shared co-authors 0

Greg Donahue

Penn Epigenetics Institute, Perelman School of Medicine, University of Pennsylvania

Career Start Year 2010

Number of shared co-authors 1

Jeremy M Simon

University of North Carolina

Career Start Year 2010

Number of shared co-authors 30

Piotr J Balwierz

MRC London Institute of Medical Sciences

Career Start Year 2009

Number of shared co-authors 2

Suhn K Rhie

Keck School of Medicine of USC

Career Start Year 2009

Number of shared co-authors 2

Chongzhi Zang

Center for Public Health Genomics, University of Virginia

Career Start Year 2008

Number of shared co-authors 2

Maud de Dieuleveult

ULB-Cancer Research Centre (U-CRC), Universite Libre De Bruxelles

Career Start Year 2008

Number of shared co-authors 0

Lukas Chavez

University of California San Diego

Career Start Year 2008

Number of shared co-authors 3

Anagha Joshi

University of Bergen

Career Start Year 2007

Number of shared co-authors 2

Robin Andersson

University of Copenhagen

Career Start Year 2007

Number of shared co-authors 2

Lingyun Song

Center for Genomic & Computational Biology, Duke University

Career Start Year 2004

Number of shared co-authors 36

Duncan Sproul

Institute of Genetics and Cancer, University of Edinburgh

Career Start Year 2004

Number of shared co-authors 0

Shyam Prabhakar

Genome Institute of Singapore (GIS)

Career Start Year 2004

Number of shared co-authors 4

Alexias Safi

Center for Genomic and Computational Biology, Duke University Medical Center

Career Start Year 2003

Number of shared co-authors 32

Mathieu Lupien

Princess Margaret Cancer Research Centre

Career Start Year 2003

Number of shared co-authors 2

Tarjei S Mikkelsen

Harvard University, USA Broad Institute, USA Harvard Stem Cell Institute

Career Start Year 2001

Number of shared co-authors 9

Michael D Wilson

SickKids Research Institute

Career Start Year 2000

Number of shared co-authors 1

Terrence S Furey

University of North Carolina at Chapel Hill

Career Start Year 2000

Number of shared co-authors 38

Yoichiro Shibata

Center for Genomic and Computational Biology, Duke University.

Career Start Year 2000

Number of shared co-authors 6

Benjamin P Berman

Institute for Medical Research Israel-Canada, The Hebrew University of Jerusalem

Career Start Year 2000

Number of shared co-authors 3

Guo-Cheng Yuan

Dana-Farber Cancer Institute, Harvard School of Public Health

Career Start Year 2000

Number of shared co-authors 9

Kai Tan

University of Pennsylvania

Career Start Year 1999

Number of shared co-authors 1

Duncan T Odom

Cancer Research UK Cambridge Institute, University of Cambridge

Career Start Year 1999

Number of shared co-authors 13

Martin Hirst

University of British Columbia

Career Start Year 1998

Number of shared co-authors 21

Peter C Scacheri

Case Western Reserve University School of Medicine

Career Start Year 1995

Number of shared co-authors 10

Bradley E Bernstein

Broad Institute of MIT and Harvard

Career Start Year 1994

Number of shared co-authors 31

Holger Heyn

Barcelona Institute of Science and Technology, Spain Universitat Pompeu Fabra

Career Start Year 1988

Number of shared co-authors 5

row(s) 1 - 30 of 30

Bing Ren

Center for Epigenomics, University of California San Diego

Co-authored papers 19

Zhen Ye

Ludwig Institute for Cancer Research, University of California San Diego

Co-authored papers 11

Lee E Edsall

Center for Genomic and Computational Biology, Duke University.

Co-authored papers 11

Joseph R Ecker

The Salk Institute for Biological Studies

Co-authored papers 6

Ah Young Lee

Co-authored papers 5

Robert D Hawkins

Co-authored papers 5

Sebastian Preissl

Center for Epigenomics, University of California San Diego

Co-authored papers 5

Gary C Hon

Cecil H. and Ida Green Center for Reproductive Biology Sciences

Co-authored papers 5

Sarit Klugman

Co-authored papers 4

Bin Li

Co-authored papers 4

Yin Shen

Wenzhou Medical University

Co-authored papers 4

Otavia L Caballero

Ludwig Institute for Cancer Research Ltd.

Co-authored papers 3

Inkyung Jung

Co-authored papers 3

James A Thomson

Co-authored papers 3

Ron Stewart

Co-authored papers 3

Chia-An Yen

Co-authored papers 3

Andrew J G Simpson

University of Hull

Co-authored papers 3

David McCleary

University of California at Berkeley

Co-authored papers 3

Minh Ngo

Co-authored papers 3

Ryan Lister

Co-authored papers 3

Robert L Strausberg

Ludwig Institute for Cancer Research

Co-authored papers 3

Jessica Antosiewicz-Bourget

Co-authored papers 3

Rongxin Fang

Ludwig Institute for Cancer Research, University of California San Diego

Co-authored papers 3

Leonard K Lee

Co-authored papers 3

David U Gorkin

Center for Epigenomics, University of California San Diego

Co-authored papers 3

Anamaria A Camargo

Hospital Sirio-Libanes

Co-authored papers 3

Neil C Chi

University of California San Diego

Co-authored papers 2

Ross C Hardison

Co-authored papers 2

Theresa K Canfield

University of Washington

Co-authored papers 2

Len A Pennacchio

Lawrence Berkeley National Laboratory

Co-authored papers 2

1 - 30

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