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Author Details

Ryan D Hernandez
University of California san francisco
2005
65
38
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37138028The hydrocortisone-responsive urinary metabolome of premature infants.Pediatr Res2023
37755251The Urinary Metabolomic Fingerprint in Extremely Preterm Infants on Total Parenteral Nutrition vs. Enteral Feeds.Metabolites2023
37574391Efficacy of National Comprehensive Cancer Network Guidelines in Identifying Pathogenic Germline Variants Among Unselected Patients with Prostate Cancer: The PROCLAIM Trial.Eur Urol Oncol2023
34385354Population sequencing data reveal a compendium of mutational processes in the human germ line.Science2021
31587362Population genetic simulation study of power in association testing across genetic architectures and study designs.Genet Epidemiol2020
31964835De novo mutations across 1,465 diverse genomes reveal mutational insights and reductions in the Amish founder population.Proc Natl Acad Sci U S A2020
32071195The Temporal Dynamics of Background Selection in Nonequilibrium Populations.Genetics2020
33372659Recent shifts in the genomic ancestry of Mexican Americans may alter the genetic architecture of biomedical traits.Elife2020
33208503A <i>Cutibacterium acnes</i> antibiotic modulates human skin microbiota composition in hair follicles.Sci Transl Med2020
30601801Correction: Human demographic history has amplified the effects of background selection across the genome.PLoS Genet2019
30206298A genome-wide association and admixture mapping study of bronchodilator drug response in African Americans with asthma.Pharmacogenomics J2019
30201514An admixture mapping meta-analysis implicates genetic variation at 18q21 with asthma susceptibility in Latinos.J Allergy Clin Immunol2019
31543216Ancestry-Dependent Enrichment of Deleterious Homozygotes in Runs of Homozygosity.Am J Hum Genet2019
31477931Ultrarare variants drive substantial cis heritability of human gene expression.Nat Genet2019
29509491Whole-Genome Sequencing of Pharmacogenetic Drug Response in Racially Diverse Children with Asthma.Am J Respir Crit Care Med2018
29912945Human demographic history has amplified the effects of background selection across the genome.PLoS Genet2018
30118682An Mtb-Human Protein-Protein Interaction Map Identifies a Switch between Host Antiviral and Antibacterial Responses.Mol Cell2018
30524754Ebola virus, but not Marburg virus, replicates efficiently and without required adaptation in snake cells.Virus Evol2018
29548336ROP: dumpster diving in RNA-sequencing to find the source of 1 trillion reads across diverse adult human tissues.Genome Biol2018
28035032Using genotype array data to compare multi- and single-sample variant calls and improve variant call sets from deep coverage whole-genome sequencing data.Bioinformatics2017
28837668Prominent features of the amino acid mutation landscape in cancer.PLoS One2017
28874603Cancer-associated arginine-to-histidine mutations confer a gain in pH sensing to mutant proteins.Sci Signal2017
27255379Statistical inference of a convergent antibody repertoire response to influenza vaccine.Genome Med2016
27768889Genetic Ancestry and Natural Selection Drive Population Differences in Immune Responses to Pathogens.Cell2016
27984726Functional Segregation of Overlapping Genes in HIV.Cell2016
27725671A continuum of admixture in the Western Hemisphere revealed by the African Diaspora genome.Nat Commun2016
27799563Global environmental drivers of influenza.Proc Natl Acad Sci U S A2016
27197206Selection and explosive growth alter genetic architecture and hamper the detection of causal rare variants.Genome Res2016
25371374Genetic simulation tools for post-genome wide association studies of complex diseases.Genet Epidemiol2015
26587832Pooled Sequencing of Candidate Genes Implicates Rare Variants in the Development of Asthma Following Severe RSV Bronchiolitis in Infancy.PLoS One2015
25711833Rock, paper, scissors: harnessing complementarity in ortholog detection methods improves comparative genomic inference.G3 (Bethesda)2015
25780776CauseMap: fast inference of causality from complex time series.PeerJ2015
25417809Population genetic simulations of complex phenotypes with implications for rare variant association tests.Genet Epidemiol2015
25488688Genome-wide association study and admixture mapping reveal new loci associated with total IgE levels in Latinos.J Allergy Clin Immunol2015
25544563Global mapping of herpesvirus-host protein complexes reveals a transcription strategy for late genes.Mol Cell2015
23992748A genome-wide association study of bronchodilator response in Latinos implicates rare variants.J Allergy Clin Immunol2014
25015648selscan: an efficient multithreaded program to perform EHH-based scans for positive selection.Mol Biol Evol2014
24561480Robust forward simulations of recurrent hitchhiking.Genetics2014
23843452Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.Sci Transl Med2013
24197012High-resolution network biology: connecting sequence with function.Nat Rev Genet2013
23875710Selective constraint, background selection, and mutation accumulation variability within and between human populations.BMC Genomics2013
21358749SNP discovery, expression and cis-regulatory variation in the UGT2B genes.Pharmacogenomics J2012
23594490Population genetics of rare variants and complex diseases.Hum Hered2012
22502797Case-control admixture mapping in Latino populations enriches for known asthma-associated genes.J Allergy Clin Immunol2012
22422862A fine-scale chimpanzee genetic map from population sequencing.Science2012
22325360Resequencing candidate genes implicates rare variants in asthma susceptibility.Am J Hum Genet2012
21330547Classic selective sweeps were rare in recent human evolution.Science2011
22190034Global landscape of HIV-human protein complexes.Nature2011
22144911A population genetics-phylogenetics approach to inferring natural selection in coding sequences.PLoS Genet2011
21804549Meta-analysis of genome-wide association studies of asthma in ethnically diverse North American populations.Nat Genet2011
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Collaborators

Carlos D Bustamante
Stanford University
Co-authored papers 19
Esteban G Burchard
University of California San Francisco (UCSF)
Co-authored papers 11
Zachary A Szpiech
Pennsylvania State University
Co-authored papers 10
Kathleen C Barnes
Co-authored papers 8
Rasmus Nielsen
Co-authored papers 7
Scott T Weiss
Brigham and Women's Hospital, Harvard Medical School
Co-authored papers 7
Michael C Maher
Vir Biotechnology Inc.
Co-authored papers 7
Eugene R Bleecker
Co-authored papers 6
Dan L Nicolae
Co-authored papers 5
Andrés Moreno-Estrada
Co-authored papers 5
Andrew G Clark
Co-authored papers 5
Deborah A Meyers
Co-authored papers 5
Carole Ober
University of Chicago
Co-authored papers 5
Sam S Oh
University of California san francisco
Co-authored papers 4
Thomas J White
Co-authored papers 4
Benjamin A Raby
Co-authored papers 4
John J Sninsky
Co-authored papers 4
Saunak Sen
University of Tennessee Health Science Center
Co-authored papers 4
Noah Zaitlen
Co-authored papers 4
Melissa J Hubisz
Co-authored papers 4
Nevan J Krogan (CM4AI)
University of California San Francisco
Co-authored papers 4
Shamil R Sunyaev
Harvard Medical School
Co-authored papers 3
Richard A Gibbs
Baylor College of Medicine
Co-authored papers 3
Gwendolyn M Jang
Gladstone Institute of Data Science and Biotechnology, J. David Gladstone Institutes
Co-authored papers 3
Mark D Adams
Case Western Reserve University School of Medicine
Co-authored papers 3
Donna M Muzny
Baylor College of Medicine
Co-authored papers 3
Lynne V Nazareth
Baylor College of Medicine
Co-authored papers 3
Jeffrey R Johnson
Gladstone Institutes
Co-authored papers 3
Stefanie J??ger
Institute of Molecular Biosciences, Goethe University Frankfurt
Co-authored papers 3
Badri Padhukasahasram
Co-authored papers 3
Release 1.2