Author details

Full Name

Julie Ahringer

Affiliation

ORCID

Career Start Year

1991

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
34933938	Accessible Region Conformation Capture (ARC-C) gives high-resolution insights into genome architecture and regulation.	Genome Res	2022
36525485	Widespread transposon co-option in the germline regulatory network.		2022
33953908	periodicDNA: an R/Bioconductor package to investigate k-mer periodicity in DNA.	F1000Research	2021
33093068	Distinctive regulatory architectures of germline-active and somatic genes in .	Genome Research	2020
32203506	The Caenorhabditis elegans homolog of the Evi1 proto-oncogene, egl-43, coordinates G1 cell cycle arrest with pro-invasive gene expression during anchor cell invasion.	PLoS Genetics	2020
30713076	Comparative Epigenomics Reveals that RNA Polymerase II Pausing and Chromatin Domain Organization Control Nematode piRNA Biogenesis.	Dev Cell	2019
31602465	Physical and functional interaction between SET1/COMPASS complex component CFP-1 and a Sin3S HDAC complex in C. elegans.	Nucleic Acids Res	2019
30567997	The USTC co-opts an ancient machinery to drive piRNA transcription in <i>C. elegans</i>.	Genes Dev	2019
29631108	Genome organization at different scales: nature, formation and function.	Current Opinion in Cell Biology	2018
30362940	Chromatin accessibility dynamics across <i>C. elegans</i> development and ageing.	Elife	2018
30346273	Morphogenetic degeneracies in the actomyosin cortex.	Elife	2018
29378810	Repressive Chromatin in <i>Caenorhabditis elegans</i>: Establishment, Composition, and Function.	Genetics	2018
28294943	A team of heterochromatin factors collaborates with small RNA pathways to combat repetitive elements and germline stress.	Elife	2017
28980937	Correction: A team of heterochromatin factors collaborates with small RNA pathways to combat repetitive elements and germline stress.	Elife	2017
28874466	An Alternative STAT Signaling Pathway Acts in Viral Immunity in .	mBio	2017
29058338	Broad Chromatin Domains: An Important Facet of Genome Regulation.	BioEssays	2017
28781174	aPKC Cycles between Functionally Distinct PAR Protein Assemblies to Drive Cell Polarity.	Developmental Cell	2017
27918597	SeqPlots - Interactive software for exploratory data analyses, pattern discovery and visualization in genomics.	Wellcome Open Research	2016
27385332	Comparative assessment of fluorescent proteins for in vivo imaging in an animal model system.	Molecular Biology of the Cell	2016
27791097	Stable <i>Caenorhabditis elegans</i> chromatin domains separate broadly expressed and developmentally regulated genes.	Proc Natl Acad Sci U S A	2016
25737279	The DREAM complex promotes gene body H2A.Z for target repression.	Genes and Development	2015
25164756	Comparative analysis of metazoan chromatin organization.	Nature	2014
24535824	CDK phosphorylation of SLD-2 is required for replication initiation and germline development in C. elegans.	Journal of Cell Biology	2014
24696457	PRDE-1 is a nuclear factor essential for the biogenesis of Ruby motif-dependent piRNAs in C. elegans.	Genes and Development	2014
24653213	Extreme HOT regions are CpG-dense promoters in C. elegans and humans.	Genome Research	2014
23550086	The landscape of RNA polymerase II transcription initiation in C. elegans reveals promoter and enhancer architectures.	Genome Res	2013
23990794	Identification of DSB-1, a protein required for initiation of meiotic recombination in Caenorhabditis elegans, illuminates a crossover assurance checkpoint.	PLoS Genetics	2013
23242217	Systematic genetic interaction screens uncover cell polarity regulators and functional redundancy.	Nature Cell Biology	2013
23675306	Duplication and retention biases of essential and non-essential genes revealed by systematic knockdown analyses.	PLoS Genetics	2013
23028348	H4K20me1 contributes to downregulation of X-linked genes for C. elegans dosage compensation.	PLoS Genet	2012
21637852	MosSCI and gateway compatible plasmid toolkit for constitutive and inducible expression of transgenes in the C. elegans germline.	PLoS ONE	2011
21177964	Broad chromosomal domains of histone modification patterns in C. elegans.	Genome Res	2011
21131980	An assessment of histone-modification antibody quality.	Nat Struct Mol Biol	2011
21646344	Systematic bias in high-throughput sequencing data and its correction by BEADS.	Nucleic Acids Research	2011
20510924	Cell polarity in eggs and epithelia: parallels and diversity.	Cell	2010
20977703	The Caenorhabditis elegans CDT-2 ubiquitin ligase is required for attenuation of EGFR signalling in vulva precursor cells.	BMC Developmental Biology	2010
21177976	Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project.	Science	2010
19182803	Differential chromatin marking of introns and expressed exons by H3K36me3.	Nature Genetics	2009
18694560	A casein kinase 1 and PAR proteins regulate asymmetry of a PIP(2) synthesis enzyme for asymmetric spindle positioning.	Developmental Cell	2008
18521077	The art and design of genetic screens: RNA interference.	Nat Rev Genet	2008
18316412	PAR proteins direct asymmetry of the cell cycle regulators Polo-like kinase and Cdc25.	Journal of Cell Biology	2008
17383625	Similar requirements for CDC-42 and the PAR-3/PAR-6/PKC-3 complex in diverse cell types.	Developmental Biology	2007
17374146	Identification of the C. elegans anaphase promoting complex subunit Cdc26 by phenotypic profiling and functional rescue in yeast.	BMC Dev Biol	2007
17551574	Asymmetry of early endosome distribution in C. elegans embryos.	PLoS ONE	2007
17967950	Microtubules are involved in anterior-posterior axis formation in C. elegans embryos.	Journal of Cell Biology	2007
17344882	RNA interference has second helpings.	Nature Biotechnology	2007
16377559	Playing ping pong with pins: cortical and microtubule-induced polarity.	Cell	2005
15693958	Living on the edge.		2005
15990876	Chromatin regulation and sumoylation in the inhibition of Ras-induced vulval development in Caenorhabditis elegans.	EMBO Journal	2005
15068791	Centrosome maturation and duplication in C. elegans require the coiled-coil protein SPD-2.	Developmental Cell	2004