Author details

Full Name

Jason F Kreisberg

Affiliation

University of California San Diego

ORCID

Career Start Year

2000

Papers

H Index

Expertise

CM4AI Collaborator

Dexter Pratt (CM4AI)

PMID	Paper Title	Journal Title	Published Year
36653526	Mapping the common gene networks that underlie related diseases.	Nat Protoc	2023
37527041	Genome-wide association studies of human and rat BMI converge on synapse, epigenome, and hormone signaling networks.	Cell Rep	2023
37169829	Multimodal perturbation analyses of cyclin-dependent kinases reveal a network of synthetic lethalities associated with cell-cycle regulation and transcriptional regulation.	Sci Rep	2023
34591642	A protein network map of head and neck cancer reveals PIK3CA mutant drug sensitivity.	Science	2021
34591613	Interpretation of cancer mutations using a multiscale map of protein systems.	Science	2021
34591612	A protein interaction landscape of breast cancer.	Science	2021
34819669	A multi-scale map of cell structure fusing protein images and interactions.	Nature	2021
34534210	Genetic dissection of complex traits using hierarchical biological knowledge.	PLoS Comput Biol	2021
32619550	Quantitative Translation of Dog-to-Human Aging by Conserved Remodeling of the DNA Methylome.	Cell Syst	2020
35122032	Prospecting whole cancer genomes.	Nat Cancer	2020
33096023	Predicting Drug Response and Synergy Using a Deep Learning Model of Human Cancer Cells.	Cancer Cell	2020
31602605	Ultrahigh-Density Screens for Genome-Wide Yeast EMAPs in a Single Plate.	Methods Mol Biol	2019
29605183	Systematic Evaluation of Molecular Networks for Discovery of Disease Genes.	Cell Syst	2018
30030027	Theory and Application of Network Biology Toward Precision Medicine.	J Mol Biol	2018
30209081	Multiple Routes to Oncogenesis Are Promoted by the Human Papillomavirus-Host Protein Network.	Cancer Discov	2018
29906441	Visible Machine Learning for Biomedicine.	Cell	2018
29636367	Disruption of <i>NSD1</i> in Head and Neck Cancer Promotes Favorable Chemotherapeutic Responses Linked to Hypomethylation.	Mol Cancer Ther	2018
29610481	A global transcriptional network connecting noncoding mutations to changes in tumor gene expression.	Nat Genet	2018
28319113	Combinatorial CRISPR-Cas9 screens for de novo mapping of genetic interactions.	Nat Methods	2017
28351423	Epigenetic aging signatures in mice livers are slowed by dwarfism, calorie restriction and rapamycin treatment.	Genome Biol	2017
28188128	Interaction Landscape of Inherited Polymorphisms with Somatic Events in Cancer.	Cancer Discov	2017
26949740	Translation of Genotype to Phenotype by a Hierarchy of Cell Subsystems.	Cell Syst	2016
27417679	Challenges in identifying cancer genes by analysis of exome sequencing data.	Nat Commun	2016
27043210	Structure-Based Analysis Reveals Cancer Missense Mutations Target Protein Interaction Interfaces.	PLoS One	2016
27105112	Methylome-wide Analysis of Chronic HIV Infection Reveals Five-Year Increase in Biological Age and Epigenetic Targeting of HLA.	Mol Cell	2016
26682651	Evidence for a common evolutionary rate in metazoan transcriptional networks.	Elife	2015
26555223	Analysis of Matched Tumor and Normal Profiles Reveals Common Transcriptional and Epigenetic Signals Shared across Cancer Types.	PLoS One	2015
25329838	Establishment of a novel whole animal HTS technology platform for melioidosis drug discovery.	Comb Chem High Throughput Screen	2014
23263008	Growth inhibition of pathogenic bacteria by sulfonylurea herbicides.	Antimicrob Agents Chemother	2013
24068961	The condition-dependent transcriptional landscape of Burkholderia pseudomallei.	PLoS Genet	2013
22672310	Modulation of Caenorhabditis elegans infection sensitivity by the LIN-7 cell junction protein.	Cell Microbiol	2012
20368977	A genomic survey of positive selection in Burkholderia pseudomallei provides insights into the evolution of accidental virulence.	PLoS Pathog	2010
17238285	In vitro derived dendritic cells trans-infect CD4 T cells primarily with surface-bound HIV-1 virions.	PLoS Pathog	2007
16606671	Endogenous factors enhance HIV infection of tissue naive CD4 T cells by stimulating high molecular mass APOBEC3G complex formation.	J Exp Med	2006
16439555	Human immunodeficiency virus fusion to dendritic cells declines as cells mature.	J Virol	2006
15829920	Cellular APOBEC3G restricts HIV-1 infection in resting CD4+ T cells.	Nature	2005
11910025	The interdigitated beta-helix domain of the P22 tailspike protein acts as a molecular clamp in trimer stabilization.	Protein Sci	2002
12429519	HIV-1 Vpr displays natural protein-transducing properties: implications for viral pathogenesis.	Virology	2002
11461707	Folate receptor-alpha is a cofactor for cellular entry by Marburg and Ebola viruses.	Cell	2001
11507229	Cytopathicity of human immunodeficiency virus type 1 primary isolates depends on coreceptor usage and not patient disease status.	J Virol	2001
11672548	HIV-1 actively replicates in naive CD4(+) T cells residing within human lymphoid tissues.	Immunity	2001
11206055	Beta-helix core packing within the triple-stranded oligomerization domain of the P22 tailspike.	Protein Sci	2000

1 - 42 of 42

Joseph B Hiatt

Fred Hutchinson Cancer Center

Career Start Year 2009

Number of shared co-authors 19

Eric Paquet

University of Laval

Career Start Year 2007

Number of shared co-authors 1

Raul Rabadan

Columbia University Vagelos College of Physicians and Surgeons

Career Start Year 2006

Number of shared co-authors 1

Fabio Zanini

Stanford University

Career Start Year 2006

Number of shared co-authors 2

Kristen K Dang

Benaroya Research Institute at Virginia Mason

Career Start Year 2006

Number of shared co-authors 1

Robert Sebra

Icahn School of Medicine at Mount Sinai

Career Start Year 2004

Number of shared co-authors 3

Agnes C Paquet

Universite Cote d'Azur, CNRS UMR5

Career Start Year 2004

Number of shared co-authors 0

Harm van Bakel

Icahn School of Medicine at Mount Sinai

Career Start Year 2002

Number of shared co-authors 7

Eran Segal

Weizmann Institute of Science

Career Start Year 2001

Number of shared co-authors 6

David K Crossman

University of Alabama at Birmingham

Career Start Year 2000

Number of shared co-authors 0

J??rg Grigull

York University

Career Start Year 2000

Number of shared co-authors 1

Shawn Levy

HudsonAlpha Institute for Biotechnology

Career Start Year 1999

Number of shared co-authors 3

David R Powell

Biomedicine Discovery Institute, Monash University

Career Start Year 1998

Number of shared co-authors 0

Sarah J Wheelan

National Human Genome Research Institute, National Institutes of Health

Career Start Year 1998

Number of shared co-authors 2

Shannon K McWeeney

Oregon Health & Science University, University of California Berkeley

Career Start Year 1997

Number of shared co-authors 0

Sarah A Teichmann

Wellcome Sanger Institute

Career Start Year 1996

Number of shared co-authors 4

Robert A Holt

BC Cancer Research Institute

Career Start Year 1996

Number of shared co-authors 5

Ioannis Xenarios

University of Lausanne

Career Start Year 1994

Number of shared co-authors 0

Joseph L DeRisi

University of California San Francisco

Career Start Year 1994

Number of shared co-authors 2

Jason E McDermott

Pacific Northwest National Laboratory

Career Start Year 1993

Number of shared co-authors 2

Jenny Xiang

Caryl and Israel Englander Institute for Precision Medicine.

Career Start Year 1993

Number of shared co-authors 0

Joel S Bader

Johns Hopkins University

Career Start Year 1993

Number of shared co-authors 1

Mark Gerstein

Yale University

Career Start Year 1991

Number of shared co-authors 10

Zolt??n N Oltvai

University of Rochester

Career Start Year 1991

Number of shared co-authors 0

Aleksandar Milosavljevic

Baylor College of Medicine

Career Start Year 1991

Number of shared co-authors 2

Nir Hacohen

Broad Institute of MIT and Harvard

Career Start Year 1989

Number of shared co-authors 9

Frederic D Bushman

Perelman School of Medicine, University of Pennsylvania

Career Start Year 1983

Number of shared co-authors 5

Richard H Scheuermann

J. Craig Venter Institute

Career Start Year 1983

Number of shared co-authors 5

George M Church

Harvard Medical School

Career Start Year 1977

Number of shared co-authors 6

Sean Davis

Johns Hopkins School of Medicine, National Cancer Institute, Princeton University, University of Colorado Anschutz Medical Campus, University of Pittsburgh, University of Washington

Career Start Year 1974

Number of shared co-authors 3

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