Author details

Full Name

Nils Gehlenborg

Affiliation

ORCID

Career Start Year

2006

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36688700	Cistrome Explorer: an interactive visual analysis tool for large-scale epigenomic data.	Bioinformatics	2023
36166553	Multi-View Design Patterns and Responsive Visualization for Genomics Data.	IEEE Trans Vis Comput Graph	2023
36223348	Extending the Nested Model for User-Centric XAI: A Design Study on GNN-based Drug Repurposing.	IEEE Trans Vis Comput Graph	2023
36155452	Polyphony: an Interactive Transfer Learning Framework for Single-Cell Data Analysis.	IEEE Trans Vis Comput Graph	2023
36191105	GenoREC: A Recommendation System for Interactive Genomics Data Visualization.	IEEE Trans Vis Comput Graph	2023
37603400	Alerts and Collections for Automating Patients' Sensemaking and Organizing of Their Electronic Health Record Data for Reflection, Planning, and Clinical Visits: Qualitative Research-Through-Design Study.	JMIR Hum Factors	2023
37914857	Chromoscope: interactive multiscale visualization for structural variation in human genomes.	Nat Methods	2023
38074525	DRAVA: Aligning Human Concepts with Machine Learning Latent Dimensions for the Visual Exploration of Small Multiples.	Proc SIGCHI Conf Hum Factor Comput Syst	2023
37971305	Cistrome Data Browser: integrated search, analysisÂ and visualization of chromatin data.		2023
37468756	Advances and prospects for the Human BioMolecular Atlas Program (HuBMAP).	Nat Cell Biol	2023
37468619	Organ Mapping Antibody Panels: a community resource for standardized multiplexed tissue imaging.	Nat Methods	2023
37468387	How surgeons use risk calculators and non-clinical factors for informed consent and shared decision making: A qualitative study.	Am J Surg	2023
37333123	The chromatin landscape of healthy and injured cell types in the human kidney.	bioRxiv	2023
37010887	New Ways for Patients to Make Sense of Their Electronic Health Record Data Using the Discovery Web Application: Think-Aloud Evaluation Study.	JMIR Form Res	2023
36945543	Matrix and analysis metadata standards (MAMS) to facilitate harmonization and reproducibility of single-cell data.	bioRxiv	2023
36865282	OME-Zarr: a cloud-optimized bioimaging file format with international community support.	bioRxiv	2023
36688709	Gos: a declarative library for interactive genomics visualization in Python.	Bioinformatics	2023
34587068	ThreadStates: State-based Visual Analysis of Disease Progression.	IEEE Trans Vis Comput Graph	2022
35768548	International electronic health record-derived post-acute sequelae profiles of COVID-19 patients.	NPJ Digit Med	2022
35501320	The 4D Nucleome Data Portal as a resource for searching and visualizing curated nucleomics data.	Nat Commun	2022
35738646	Changes in laboratory value improvement and mortality rates over the course of the pandemic: an international retrospective cohort study of hospitalised patients infected with SARS-CoV-2.	BMJ Open	2022
35486432	Effective Communication of Personalized Risks and Patient Preferences During Surgical Informed Consent Using Data Visualization: Qualitative Semistructured Interview Study With Patients After Surgery.	JMIR Hum Factors	2022
35545714	Viv: multiscale visualization of high-resolution multiplexed bioimaging data on the web.	Nat Methods	2022
36323678	Author Correction: The 4D Nucleome Data Portal as a resource for searching and visualizing curated nucleomics data.	Nat Commun	2022
34596551	Gosling: A Grammar-based Toolkit for Scalable and Interactive Genomics Data Visualization.	IEEE Trans Vis Comput Graph	2022
34889759	Authorship Correction: International Changes in COVID-19 Clinical Trajectories Across 315 Hospitals and 6 Countries: Retrospective Cohort Study.	J Med Internet Res	2021
33691032	Making Tools that People Will Use: User-Centered Design in Computational Biology Research.	Pac Symp Biocomput	2021
34115127	International Analysis of Electronic Health Records of Children and Youth Hospitalized With COVID-19 Infection in 6 Countries.	JAMA Netw Open	2021
34252935	OncoThreads: visualization of large-scale longitudinal cancer molecular data.	Bioinformatics	2021
33026994	A Generic Framework and Library for Exploration of Small Multiples through Interactive Piling.	IEEE Trans Vis Comput Graph	2021
31442989	Pattern-Driven Navigation in 2D Multiscale Visualizations with Scalable Insets.	IEEE Trans Vis Comput Graph	2020
34334852	Peax: Interactive Visual Pattern Search in Sequential Data Using Unsupervised Deep Representation Learning.	Comput Graph Forum	2020
33188371	Guidelines for reporting single-cell RNA-seq experiments.	Nat Biotechnol	2020
29993603	Lineage: Visualizing Multivariate Clinical Data in Genealogy Graphs.	IEEE Trans Vis Comput Graph	2019
31768085	Tasks, Techniques, and Tools for Genomic Data Visualization.	Comput Graph Forum	2019
31396383	Visual Pattern-Driven Exploration of Big Data.	2018 Int Symp Big Data Vis Immers Analyt (BDVA) (2018)	2018
28866592	HiPiler: Visual Exploration of Large Genome Interaction Matrices with Interactive Small Multiples.	IEEE Trans Vis Comput Graph	2018
30143029	HiGlass: web-based visual exploration and analysis of genome interaction maps.	Genome Biol	2018
29186292	SATORI: a system for ontology-guided visual exploration of biomedical data repositories.	Bioinformatics	2018
28899361	Interactive visual exploration and refinement of cluster assignments.	BMC Bioinformatics	2017
28645171	UpSetR: an R package for the visualization of intersecting sets and their properties.	Bioinformatics	2017
28004011	METHODS TO ENHANCE THE REPRODUCIBILITY OF PRECISION MEDICINE.	Pac Symp Biocomput	2016
29973745	AVOCADO: Visualization of Workflow-Derived Data Provenance for Reproducible Biomedical Research.	Comput Graph Forum	2016
27942091	From Visual Exploration to Storytelling and Back Again.	Comput Graph Forum	2016
26061751	Comprehensive, Integrative Genomic Analysis of Diffuse Lower-Grade Gliomas.	N Engl J Med	2015
25825831	Response to "Plotting intersections" by Lentini.	Nat Methods	2015
25164756	Comparative analysis of metazoan chromatin organization.	Nature	2014
25313082	Characterization of HPV and host genome interactions in primary head and neck cancers.	Proc Natl Acad Sci U S A	2014
26356916	Domino: Extracting, Comparing, and Manipulating Subsets Across Multiple Tabular Datasets.	IEEE Trans Vis Comput Graph	2014
26356912	UpSet: Visualization of Intersecting Sets.	IEEE Trans Vis Comput Graph	2014