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| 32209682 | Tailoring a Global Iron Regulon to a Uropathogen. | mBio | 2020 |
| 30801063 | Complete Genome Sequence of Dickeya dianthicola ME23, a Pathogen Causing Blackleg and Soft Rot Diseases of Potato. | Microbiol Resour Announc | 2019 |
| 28002470 | Sepsis and Hemocyte Loss in Honey Bees (Apis mellifera) Infected with Serratia marcescens Strain Sicaria. | PLoS One | 2016 |
| 26162887 | The Enterobacterium Trabulsiella odontotermitis Presents Novel Adaptations Related to Its Association with Fungus-Growing Termites. | Appl Environ Microbiol | 2015 |
| 24596148 | Evolution of extreme resistance to ionizing radiation via genetic adaptation of DNA repair. | Elife | 2014 |
| 24952641 | Identification of host-microbe interaction factors in the genomes of soft rot-associated pathogens Dickeya dadantii 3937 and Pectobacterium carotovorum WPP14 with supervised machine learning. | BMC Genomics | 2014 |
| 23758866 | Inferring ancient metabolism using ancestral core metabolic models of enterobacteria. | BMC Syst Biol | 2013 |
| 24384712 | Computing the joint distribution of tree shape and tree distance for gene tree inference and recombination detection. | IEEE/ACM Trans Comput Biol Bioinform | 2013 |
| 24116118 | Transcriptome changes associated with anaerobic growth in Yersinia intermedia (ATCC29909). | PLoS One | 2013 |
| 22383620 | Using comparative genomics for inquiry-based learning to dissect virulence of Escherichia coli O157:H7 and Yersinia pestis. | CBE Life Sci Educ | 2012 |
| 23035691 | Analysis of the Lactobacillus casei supragenome and its influence in species evolution and lifestyle adaptation. | BMC Genomics | 2012 |
| 22702350 | The role of secretion systems and small molecules in soft-rot Enterobacteriaceae pathogenicity. | Annu Rev Phytopathol | 2012 |
| 22439737 | Evolution of the metabolic and regulatory networks associated with oxygen availability in two phytopathogenic enterobacteria. | BMC Genomics | 2012 |
| 22334516 | Insight into the transmission biology and species-specific functional capabilities of tsetse (Diptera: glossinidae) obligate symbiont Wigglesworthia. | mBio | 2012 |
| 21217001 | Genome sequence of the plant-pathogenic bacterium Dickeya dadantii 3937. | J Bacteriol | 2011 |
| 22044664 | The evolution of metabolic networks of E. coli. | BMC Syst Biol | 2011 |
| 22120664 | The Comprehensive Phytopathogen Genomics Resource: a web-based resource for data-mining plant pathogen genomes. | Database (Oxford) | 2011 |
| 20370821 | Annotation and overview of the Pseudomonas savastanoi pv. savastanoi NCPPB 3335 draft genome reveals the virulence gene complement of a tumour-inducing pathogen of woody hosts. | Environ Microbiol | 2010 |
| 21119014 | Unifying themes in microbial associations with animal and plant hosts described using the gene ontology. | Microbiol Mol Biol Rev | 2010 |
| 20529880 | chipD: a web tool to design oligonucleotide probes for high-density tiling arrays. | Nucleic Acids Res | 2010 |
| 20593022 | progressiveMauve: multiple genome alignment with gene gain, loss and rearrangement. | PLoS One | 2010 |
| 20118253 | Complete genome sequence of the plant pathogen Erwinia amylovora strain ATCC 49946. | J Bacteriol | 2010 |
| 19278552 | Gene Ontology annotation highlights shared and divergent pathogenic strategies of type III effector proteins deployed by the plant pathogen Pseudomonas syringae pv tomato DC3000 and animal pathogenic Escherichia coli strains. | BMC Microbiol | 2009 |
| 19411432 | Phylogeny and virulence of naturally occurring type III secretion system-deficient Pectobacterium strains. | Appl Environ Microbiol | 2009 |
| 19515959 | Reordering contigs of draft genomes using the Mauve aligner. | Bioinformatics | 2009 |
| 19515247 | Text-mining of PubMed abstracts by natural language processing to create a public knowledge base on molecular mechanisms of bacterial enteropathogens. | BMC Bioinformatics | 2009 |
| 19502398 | Directed evolution of ionizing radiation resistance in Escherichia coli. | J Bacteriol | 2009 |
| 17999997 | Enteropathogen Resource Integration Center (ERIC): bioinformatics support for research on biodefense-relevant enterobacteria. | Nucleic Acids Res | 2008 |
| 18986251 | Niche-specificity and the variable fraction of the Pectobacterium pan-genome. | Mol Plant Microbe Interact | 2008 |
| 18088419 | Construction and characterization of an expressed sequenced tag library for the mosquito vector Armigeres subalbatus. | BMC Genomics | 2007 |
| 18944180 | Host range and molecular phylogenies of the soft rot enterobacterial genera pectobacterium and dickeya. | Phytopathology | 2007 |
| 17966403 | A new asset for pathogen informatics--the Enteropathogen Resource Integration Center (ERIC), an NIAID Bioinformatics Resource Center for Biodefense and Emerging/Re-emerging Infectious Disease. | Adv Exp Med Biol | 2007 |
| 18025691 | Analyzing patterns of microbial evolution using the mauve genome alignment system. | Methods Mol Biol | 2007 |
| 16381899 | ASAP: a resource for annotating, curating, comparing, and disseminating genomic data. | Nucleic Acids Res | 2006 |
| 16737554 | Genome-wide detection and analysis of homologous recombination among sequenced strains of Escherichia coli. | Genome Biol | 2006 |
| 16397293 | Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. | Nucleic Acids Res | 2006 |
| 16638145 | CGHScan: finding variable regions using high-density microarray comparative genomic hybridization data. | BMC Genomics | 2006 |
| 14693819 | GRIL: genome rearrangement and inversion locator. | Bioinformatics | 2004 |
| 15231754 | Mauve: multiple alignment of conserved genomic sequence with rearrangements. | Genome Res | 2004 |
| 15184409 | Insertions, deletions, and single-nucleotide polymorphisms at rare restriction enzyme sites enhance discriminatory power of polymorphic amplified typing sequences, a novel strain typing system for Escherichia coli O157:H7. | J Clin Microbiol | 2004 |
| 15213157 | Description of the transcriptomes of immune response-activated hemocytes from the mosquito vectors Aedes aegypti and Armigeres subalbatus. | Infect Immun | 2004 |
| 15384490 | Genome-wide identification of plant-upregulated genes of Erwinia chrysanthemi 3937 using a GFP-based IVET leaf array. | Mol Plant Microbe Interact | 2004 |
| 12519969 | ASAP, a systematic annotation package for community analysis of genomes. | Nucleic Acids Res | 2003 |
| 12704152 | Complete genome sequence and comparative genomics of Shigella flexneri serotype 2a strain 2457T. | Infect Immun | 2003 |
| 12792867 | Acquisition of stcE, a C1 esterase inhibitor-specific metalloprotease, during the evolution of Escherichia coli O157:H7. | J Infect Dis | 2003 |
| 11923324 | Polymorphic amplified typing sequences provide a novel approach to Escherichia coli O157:H7 strain typing. | J Clin Microbiol | 2002 |
| 12142430 | Genome sequence of Yersinia pestis KIM. | J Bacteriol | 2002 |
| 12228266 | Identification and characterization of lpfABCC'DE, a fimbrial operon of enterohemorrhagic Escherichia coli O157:H7. | Infect Immun | 2002 |
| 12180916 | Characterization of Cah, a calcium-binding and heat-extractable autotransporter protein of enterohaemorrhagic Escherichia coli. | Mol Microbiol | 2002 |
| 12169592 | Genomic variability of O islands encoding tellurite resistance in enterohemorrhagic Escherichia coli O157:H7 isolates. | J Bacteriol | 2002 |