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Author Details

Liye Zhang
ShanghaiTech University
2011
31
17
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36476978Hypothalamic warm-sensitive neurons require TRPC4 channel for detecting internal warmth and regulating body temperature in mice.Neuron2023
37410820Structural basis of gRNA stabilization and mRNA recognition in trypanosomal RNA editing.Science2023
35169119Induction of senescence-associated secretory phenotype underlies the therapeutic efficacy of PRC2 inhibition in cancer.Cell Death Dis2022
34475268Cancer-associated dynamics and potential regulators of intronic polyadenylation revealed by IPAFinder using standard RNA-seq data.Genome Res2021
34380043NAD<sup>+</sup> supplement potentiates tumor-killing function by rescuing defective TUB-mediated NAMPT transcription in tumor-infiltrated T cells.Cell Rep2021
34517961CTS tag-based methods for investigating mitochondrial RNA modification factors in Trypanosoma brucei.Methods Enzymol2021
32191849Lexis and Grammar of Mitochondrial RNA Processing in Trypanosomes.Trends Parasitol2020
33575610Normalizing single-cell RNA sequencing data with internal spike-in-like genes.NAR Genom Bioinform2020
32051248Occludin protects secretory cells from ER stress by facilitating SNARE-dependent apical protein exocytosis.Proc Natl Acad Sci U S A2020
32614436Poly(A) binding KPAF4/5 complex stabilizes kinetoplast mRNAs in Trypanosoma brucei.Nucleic Acids Res2020
32526202Enhancer Reprogramming within Pre-existing Topologically Associated Domains Promotes TGF-β-Induced EMT and Cancer Metastasis.Mol Ther2020
30635574Pentatricopeptide repeat poly(A) binding protein KPAF4 stabilizes mitochondrial mRNAs in Trypanosoma brucei.Nat Commun2019
31216022XAB2 depletion induces intron retention in POLR2A to impair global transcription and promote cellular senescence.Nucleic Acids Res2019
30838036CaDrA: A Computational Framework for Performing Candidate Driver Analyses Using Genomic Features.Front Genet2019
29158339Genome-Wide Mapping of Decay Factor-mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4.G3 (Bethesda)2018
30333188Transcription initiation defines kinetoplast RNA boundaries.Proc Natl Acad Sci U S A2018
29661856Glutamine-utilizing transaminases are a metabolic vulnerability of TAZ/YAP-activated cancer cells.EMBO Rep2018
28684539PPR polyadenylation factor defines mitochondrial mRNA identity and stability in trypanosomes.EMBO J2017
28162994Thyroid Progenitors Are Robustly Derived from Embryonic Stem Cells through Transient, Developmental Stage-Specific Overexpression of Nkx2-1.Stem Cell Reports2017
27020893Investigating RNA editing factors from trypanosome mitochondria.Methods2016
27715485Constructive edge of uridylation-induced RNA degradation.RNA Biol2016
27119231Oncogenic ALK regulates EMT in non-small cell lung carcinoma through repression of the epithelial splicing regulatory protein 1.Oncotarget2016
26833087Antisense Transcripts Delimit Exonucleolytic Activity of the Mitochondrial 3' Processome to Generate Guide RNAs.Mol Cell2016
26773040Diffuse large B-cell lymphoma patient-derived xenograft models capture the molecular and biological heterogeneity of the disease.Blood2016
26980570Altered RNA editing in 3' UTR perturbs microRNA-mediated regulation of oncogenes and tumor-suppressors.Sci Rep2016
26702065Targetable genetic features of primary testicular and primary central nervous system lymphomas.Blood2016
25794680A YAP/TAZ-Regulated Molecular Signature Is Associated with Oral Squamous Cell Carcinoma.Mol Cancer Res2015
25225332RNA binding and core complexes constitute the U-insertion/deletion editosome.Mol Cell Biol2014
25480300Subnucleosomal structures and nucleosome asymmetry across a genome.Cell2014
22586276The linker histone plays a dual role during gametogenesis in Saccharomyces cerevisiae.Mol Cell Biol2012
21515815Stable and dynamic nucleosome states during a meiotic developmental process.Genome Res2011
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Collaborators

Stefano Monti
Co-authored papers 11
Lan Huang
University of California Irvine
Co-authored papers 7
Clinton Yu
University of California Irvine
Co-authored papers 3
Paul Van Hummelen
Co-authored papers 2
Aaron R Thorner
Co-authored papers 2
Vinay K Kartha
Co-authored papers 2
Matthew Ducar
Co-authored papers 2
Zhen-Hong Zhou
Co-authored papers 2
Greg Donahue
Penn Epigenetics Institute, Perelman School of Medicine, University of Pennsylvania
Co-authored papers 1
Shelley L Berger
Penn Epigenetics Institute, Perelman School of Medicine
Co-authored papers 1
Amanda L Christie
Dana-Farber Cancer Institute
Co-authored papers 1
Akira Watahiki
Co-authored papers 1
Xiaorong Wang
University of California Irvine
Co-authored papers 1
Jun Chen
Co-authored papers 1
En Li
Co-authored papers 1
Paola Sebastiani
Institute for Clinical Research and Health Policy Studies, Tufts Medical Center
Co-authored papers 1
Gad Getz
Broad Institute of the Massachusetts Institute of Technology and Harvard
Co-authored papers 1
Robyn M Kaake
J. David Gladstone Institutes
Co-authored papers 1
Chip Stewart
Broad Institute of MIT and Harvard
Co-authored papers 1
Jie Yang
University of Chinese Academy of Sciences
Co-authored papers 1
Guisheng Zhong
ShanghaiTech University
Co-authored papers 1
Fangzhi Tan
Zhongda Hospital, Advanced Institute for Life and Health, Southeast University
Co-authored papers 1
Todd R Golub
Broad Institute of MIT and Harvard
Co-authored papers 1
Catherine E Costello
Center for Biomedical Mass Spectrometry, Boston University
Co-authored papers 1
Azra H Ligon
Co-authored papers 1
Jianxiang Lin
Guangzhou University
Co-authored papers 1
Xiongjun Wang
Guangzhou University
Co-authored papers 1
David M Weinstock
Merck & Co.
Co-authored papers 1
Zejian Wang
ShanghaiTech University, China University of Chinese Academy of Sciences
Co-authored papers 1
Keith L Ligon
Co-authored papers 1
Release 1.2