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Author Details

Ursula Pieper
University of California san francisco
1987
56
34
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
30097089Atlas of the Radical SAM Superfamily: Divergent Evolution of Function Using a "Plug and Play" Domain.Methods Enzymol2018
26312481Prediction of Functionally Important Phospho-Regulatory Events in Xenopus laevis Oocytes.PLoS Comput Biol2015
24271400ModBase, a database of annotated comparative protein structure models and associated resources.Nucleic Acids Res2014
23499021Structure, dynamics, evolution, and function of a major scaffold component in the nuclear pore complex.Structure2013
24098102Target prediction for an open access set of compounds active against Mycobacterium tuberculosis.PLoS Comput Biol2013
23871604A role for matrix metalloproteinases in regulating mammary stem cell function via the Wnt signaling pathway.Cell Stem Cell2013
23959887Consequences of domain insertion on sequence-structure divergence in a superfold.Proc Natl Acad Sci U S A2013
23381628Coordinating the impact of structural genomics on the human α-helical transmembrane proteome.Nat Struct Mol Biol2013
22609626Facile backbone structure determination of human membrane proteins by NMR spectroscopy.Nat Methods2012
22718633Biochemical characterization and structural modeling of human cathepsin E variant 2 in comparison to the wild-type protein.Biol Chem2012
22899687Strategic protein target analysis for developing drugs to stop dental caries.Adv Dent Res2012
22544723Atomic structure of the nuclear pore complex targeting domain of a Nup116 homologue from the yeast, Candida glabrata.Proteins2012
22618536SALIGN: a web server for alignment of multiple protein sequences and structures.Bioinformatics2012
21097780ModBase, a database of annotated comparative protein structure models, and associated resources.Nucleic Acids Res2011
21365675Structure of the C-terminal domain of Saccharomyces cerevisiae Nup133, a component of the nuclear pore complex.Proteins2011
21454883A conserved coatomer-related complex containing Sec13 and Seh1 dynamically associates with the vacuole in Saccharomyces cerevisiae.Mol Cell Proteomics2011
20052679Comparison of human solute carriers.Protein Sci2010
20799350Functional hot spots in human ATP-binding cassette transporter nucleotide binding domains.Protein Sci2010
20737437Structure of a putative BenF-like porin from Pseudomonas fluorescens Pf-5 at 2.6 A resolution.Proteins2010
20505003Prediction of protease substrates using sequence and structure features.Bioinformatics2010
20310066Structures of the autoproteolytic domain from the Saccharomyces cerevisiae nuclear pore complex component, Nup145.Proteins2010
19061901Selecting optimum eukaryotic integral membrane proteins for structure determination by rapid expression and solubilization screening.J Mol Biol2009
19760129A survey of integral alpha-helical membrane proteins.J Struct Funct Genomics2009
19352362A kernel for the Tropical Disease Initiative.Nat Biotechnol2009
19381286A kernel for open source drug discovery in tropical diseases.PLoS Negl Trop Dis2009
19288503Carbanion or amide? First charge density study of parent 2-picolyllithium.Angew Chem Int Ed Engl2009
19219566Target selection and annotation for the structural genomics of the amidohydrolase and enolase superfamilies.J Struct Funct Genomics2009
18948282MODBASE, a database of annotated comparative protein structure models and associated resources.Nucleic Acids Res2009
18927591Genomic-scale prioritization of drug targets: the TDR Targets database.Nat Rev Drug Discov2008
17478513DBAli tools: mining the protein structure space.Nucleic Acids Res2007
18429317Comparative protein structure modeling using MODELLER.Curr Protoc Protein Sci2007
17570147The AnnoLite and AnnoLyze programs for comparative annotation of protein structures.BMC Bioinformatics2007
16381869MODBASE: a database of annotated comparative protein structure models and associated resources.Nucleic Acids Res2006
18428767Comparative protein structure modeling using Modeller.Curr Protoc Bioinformatics2006
16738133Protein complex compositions predicted by structural similarity.Nucleic Acids Res2006
15827081LS-SNP: large-scale annotation of coding non-synonymous SNPs based on multiple information sources.Bioinformatics2005
14681398MODBASE, a database of annotated comparative protein structure models, and associated resources.Nucleic Acids Res2004
15489337High-throughput computational and experimental techniques in structural genomics.Genome Res2004
12499313ModView, visualization of multiple protein sequences and structures.Bioinformatics2003
12824331Tools for comparative protein structure modeling and analysis.Nucleic Acids Res2003
11752309MODBASE, a database of annotated comparative protein structure models.Nucleic Acids Res2002
11910018Structural genomics: a pipeline for providing structures for the biologist.Protein Sci2002
11698677Structural genomics of enzymes involved in sterol/isoprenoid biosynthesis.Proc Natl Acad Sci U S A2001
11242120Homology-based annotation yields 1,042 new candidate genes in the Drosophila melanogaster genome.Nat Genet2001
10592238MODBASE, a database of annotated comparative protein structure models.Nucleic Acids Res2000
11104007Protein structure modeling for structural genomics.Nat Struct Biol2000
9493269Structural features of halophilicity derived from the crystal structure of dihydrofolate reductase from the Dead Sea halophilic archaeon, Haloferax volcanii.Structure1998
9521648Role of the omega-loop in the activity, substrate specificity, and structure of class A beta-lactamase.Biochemistry1998
9220963Circularly permuted beta-lactamase from Staphylococcus aureus PC1.Biochemistry1997
7582895Structural evidence for the evolutionary divergence of mycoplasma from gram-positive bacteria: the histidine-containing phosphocarrier protein.Structure1995
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Collaborators

University of California San Francisco
Co-authored papers 44
University of California at San Francisco
Co-authored papers 19
Universitat Pompeu Fabra (UPF)
Co-authored papers 13
Indian Institute of Science Education and Research Pune
Co-authored papers 10
The State University of New Jersey
Co-authored papers 9
Albert Einstein College of Medicine
Co-authored papers 8
University of California san francisco
Co-authored papers 8
Albert Einstein College of Medicine
Co-authored papers 6
Howard Hughes Medical Institute
Co-authored papers 6
New York University Grossman School of Medicine
Co-authored papers 6
Eli Lilly and Co.
Co-authored papers 6
University of California San Francisco
Co-authored papers 5
Albert Einstein College of Medicine
Co-authored papers 5
Korea Advanced Institute of Science and Technology (KAIST)
Co-authored papers 5
Carnegie Mellon University Qatar
Co-authored papers 5
The Rockefeller University
Co-authored papers 5
Albert Einstein College of Medicine
Co-authored papers 4
NYU Langone Hospital - Brooklyn Brooklyn
Co-authored papers 4
University of California San Francisco
Co-authored papers 4
New York SGX Research Center for Structural Genomics
Co-authored papers 4
Department of Pharmacological Sciences, Icahn School of Medicine at Mount Sinai
Co-authored papers 4
Lilly Research Laboratories
Co-authored papers 4
Johns Hopkins University
Co-authored papers 4
Stanford University
Co-authored papers 4
Co-authored papers 4
Pfizer Inc.
Co-authored papers 4
Columbia University
Co-authored papers 4
Weill Medical College of Cornell University
Co-authored papers 4
The Rockefeller University
Co-authored papers 4
National Chung Hsing University
Co-authored papers 4