Author details

Full Name

Emiley A Eloe-Fadrosh

Affiliation

DOE Joint Genome Institute, Lawrence Berkeley National Laboratory

ORCID

Career Start Year

2005

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37930866	IMG/PR: a database of plasmids from genomes and metagenomes with rich annotations and metadata.	Nucleic Acids Res	2024
36382399	The IMG/M data management and analysis system v.7: content updates and new features.	Nucleic Acids Res	2023
37891627	Virus diversity and activity is driven by snowmelt and host dynamics in a high-altitude watershed soil ecosystem.	Microbiome	2023
37310219	Terabase-Scale Coassembly of a Tropical Soil Microbiome.	Microbiol Spectr	2023
37377419	A standardized quantitative analysis strategy for stable isotope probing metagenomics.	mSystems	2023
37102710	Metagenomic Methods for Addressing NASA's Planetary Protection Policy Requirements on Future Missions: A Workshop Report.	Astrobiology	2023
37069400	Cohort-based learning for microbiome research community standards.	Nat Microbiol	2023
37032561	Distribution and abundance of tetraether lipid cyclization genes in terrestrial hot springs reflect pH.	Environ Microbiol	2023
36448874	Substrate availability and not thermal acclimation controls microbial temperature sensitivity response to long-term warming.	Glob Chang Biol	2023
36879606	Dataset of 143 metagenome-assembled genomes from the Arctic and Atlantic Oceans, including 21 for eukaryotic organisms.	Data Brief	2023
36877031	Genomic Features Predict Bacterial Life History Strategies in Soil, as Identified by Metagenomic Stable Isotope Probing.	mBio	2023
36399502	IMG/VR v4: an expanded database of uncultivated virus genomes within a framework of extensive functional, taxonomic, and ecological metadata.	Nucleic Acids Res	2023
36928026	Hyperactive nanobacteria with host-dependent traits pervade Omnitrophota.	Nat Microbiol	2023
35240043	Diverse events have transferred genes for edible seaweed digestion from marine to human gut bacteria.	Cell Host Microbe	2022
35438534	Microbes and Climate Change: a Research Prospectus for the Future.	mBio	2022
35365790	Mechanistic insights into consumption of the food additive xanthan gum by the human gut microbiota.	Nat Microbiol	2022
35484634	Metagenome-assembled genomes of phytoplankton microbiomes from the Arctic and Atlantic Oceans.	Microbiome	2022
36778052	Expanding the genomic encyclopedia of <i>Actinobacteria</i> with 824 isolate reference genomes.	Cell Genom	2022
36069554	Draft Metagenome Sequences of the <i>Sphagnum</i> (Peat Moss) Microbiome from Ambient and Warmed Environments across Europe.	Microbiol Resour Announc	2022
36303775	Challenges in Bioinformatics Workflows for Processing Microbiome Omics Data at Scale.	Front Bioinform	2022
36251644	Multiomics in the central Arctic Ocean for benchmarking biodiversity change.	PLoS Biol	2022
34969995	Dissecting the dominant hot spring microbial populations based on community-wide sampling at single-cell genomic resolution.	ISME J	2022
33119741	The IMG/M data management and analysis system v.6.0: new tools and advanced capabilities.	Nucleic Acids Res	2021
33622857	Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative's Workshop and Follow-On Activities.	mSystems	2021
34531387	The biogeographic differentiation of algal microbiomes in the upper ocean from pole to pole.	Nat Commun	2021
34017316	Genomics, Exometabolomics, and Metabolic Probing Reveal Conserved Proteolytic Metabolism of <i>Thermoflexus hugenholtzii</i> and Three Candidate Species From China and Japan.	Front Microbiol	2021
34006627	DOE JGI Metagenome Workflow.	mSystems	2021
34031405	Ecology and molecular targets of hypermutation in the global microbiome.	Nat Commun	2021
33947809	Correction for Vangay et al., "Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative's Workshop and Follow-On Activities".	mSystems	2021
34080906	Metagenome Sequencing to Explore Phylogenomics of Terrestrial Cyanobacteria.	Microbiol Resour Announc	2021
33137183	IMG/VR v3: an integrated ecological and evolutionary framework for interrogating genomes of uncultivated viruses.	Nucleic Acids Res	2021
33452481	Host population diversity as a driver of viral infection cycle in wild populations of green sulfur bacteria with long standing virus-host interactions.	ISME J	2021
33208936	Publisher Correction: A genomic catalog of Earth's microbiomes.	Nat Biotechnol	2021
33150499	In-depth Spatiotemporal Characterization of Planktonic Archaeal and Bacterial Communities in North and South San Francisco Bay.	Microb Ecol	2021
33349699	CheckV assesses the quality and completeness of metagenome-assembled viral genomes.	Nat Biotechnol	2021
32372527	Ecological and genomic analyses of candidate phylum WPS-2 bacteria in an unvegetated soil.	Environ Microbiol	2020
33902723	Shotgun metagenomic analysis of microbial communities from the Loxahatchee nature preserve in the Florida Everglades.	Environ Microbiome	2020
31968354	Giant virus diversity and host interactions through global metagenomics.	Nature	2020
31896648	Metatranscriptomic Sequencing of a Cyanobacterial Soil-Surface Consortium with and without a Diverse Underlying Soil Microbiome.	Microbiol Resour Announc	2020
32047285	Author Correction: Cryptic inoviruses revealed as pervasive in bacteria and archaea across Earth's biomes.	Nat Microbiol	2020
32010100	Functional Signatures of the Epiphytic Prokaryotic Microbiome of Agaves and Cacti.	Front Microbiol	2020
33033130	Metagenomes from Experimental Hydrologic Manipulation of Restored Coastal Plain Wetland Soils (Tyrell County, North Carolina).	Microbiol Resour Announc	2020
33281778	Diversity and Distribution of a Novel Genus of Hyperthermophilic <i>Aquificae</i> Viruses Encoding a Proof-Reading Family-A DNA Polymerase.	Front Microbiol	2020
33122409	Metagenomes and Metatranscriptomes of a Glucose-Amended Agricultural Soil.	Microbiol Resour Announc	2020
32772914	Influence of the polar light cycle on seasonal dynamics of an Antarctic lake microbial community.	Microbiome	2020
32661357	Insights into the dynamics between viruses and their hosts in a hot spring microbial mat.	ISME J	2020
32612216	Terabase-scale metagenome coassembly with MetaHipMer.	Sci Rep	2020
32561801	COVID-19 pandemic reveals the peril of ignoring metadata standards.	Sci Data	2020
32350400	The National Microbiome Data Collaborative: enabling microbiome science.	Nat Rev Microbiol	2020
30407573	IMG/VR v.2.0: an integrated data management and analysis system for cultivated and environmental viral genomes.	Nucleic Acids Res	2019

1 - 50 of 98

Jose Manuel Mart??

Lawrence Livermore National Laboratory

Career Start Year 2015

Number of shared co-authors 2

Matthew R Olm

University of California berkeley

Career Start Year 2014

Number of shared co-authors 7

Alexander Crits-Christoph

University of California berkeley

Career Start Year 2013

Number of shared co-authors 1

Gail Ackermann

University of California San Diego

Career Start Year 2013

Number of shared co-authors 8

Paul I Costea

Weizmann Institute of Science

Career Start Year 2012

Number of shared co-authors 5

Antonio Gonzalez

University of California San Diego School of Medicine

Career Start Year 2011

Number of shared co-authors 19

Nicola Segata

University of Trento

Career Start Year 2008

Number of shared co-authors 14

Pier Luigi Buttigieg

Alfred Wegener Institute

Career Start Year 2007

Number of shared co-authors 17

Daniel McDonald

University of California San Diego

Career Start Year 2007

Number of shared co-authors 16

Antonio Fernandez-Guerra

Lundbeck Foundation GeoGenetics Centre, GLOBE Institute, University of Copenhagen

Career Start Year 2006

Number of shared co-authors 6

Davide Albanese

Fondazione Edmund Mach

Career Start Year 2006

Number of shared co-authors 3

Paul Wilmes

University of Luxembourg

Career Start Year 2004

Number of shared co-authors 9

Katherine Huang

Broad Institute of MIT and Harvard

Career Start Year 2004

Number of shared co-authors 12

Christopher S Miller

University of Colorado Denver.

Career Start Year 2004

Number of shared co-authors 14

Morgan G I Langille

Dalhousie University

Career Start Year 2004

Number of shared co-authors 10

Patrick D Schloss

University of Michigan ann arbor

Career Start Year 2003

Number of shared co-authors 17

Alice C McHardy

Computational Biology of Infection Research, Helmholtz Centre for Infection Research

Career Start Year 2003

Number of shared co-authors 17

Karla B Heidelberg

The University of Southern California

Career Start Year 2002

Number of shared co-authors 8

Jeroen Raes

KU Leuven - University of Leuven

Career Start Year 2002

Number of shared co-authors 18

Cliff Han

Los Alamos National Laboratory

Career Start Year 2000

Number of shared co-authors 26

Alexander Sczyrba

Center for Biotechnology (CeBiTec), Bielefeld University, Universitatsstrasse 27

Career Start Year 2000

Number of shared co-authors 9

Jo??o C Setubal

Chemistry Institute, Universidade de Sao Paulo - USP

Career Start Year 2000

Number of shared co-authors 14

Douglas B Rusch

Center for Genomics and Bioinformatics, Indiana University

Career Start Year 1998

Number of shared co-authors 18

Eric J Alm

Massachusetts Institute of Technology 21 Ames St. Cambridge

Career Start Year 1998

Number of shared co-authors 16

Konstantinos Mavromatis

Celgene Corporation

Career Start Year 1997

Number of shared co-authors 18

Jonathan H Badger

Center for Cancer Research, National Cancer Institute, National Institutes of Health

Career Start Year 1997

Number of shared co-authors 13

Zamin K Yang

Oak Ridge National Laboratory

Career Start Year 1996

Number of shared co-authors 11

Karen E Nelson

J. Craig Venter Institute, 9605 Medical Center Drive

Career Start Year 1995

Number of shared co-authors 26

Linda A Amaral-Zettler

NIOZ Royal Netherlands Institute for Sea Research

Career Start Year 1993

Number of shared co-authors 15

Edward F DeLong

University of Hawai'i at Manoa

Career Start Year 1985

Number of shared co-authors 16

row(s) 1 - 30 of 30

Nikos C Kyrpides

Co-authored papers 43

Simon Roux

DOE Joint Genome Institute, Lawrence Berkeley National Laboratory

Co-authored papers 40

Tanja Woyke

Co-authored papers 33

Neha Varghese

Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory

Co-authored papers 25

Tbk Reddy

DOE Joint Genome Institute, Lawrence Berkeley National Laboratory

Co-authored papers 24

Marcel Huntemann

DOE Joint Genome Institute, Lawrence Berkeley National Laboratory

Co-authored papers 24

Brian Foster

DOE Joint Genome Institute

Co-authored papers 13

Lynn M Schriml

University of Maryland School of Medicine, Institute for Genome Sciences

Co-authored papers 8

Nigel J Mouncey

US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory

Co-authored papers 6

Joshua Ladau

Lawrence Berkeley National Laboratory

Co-authored papers 5

Axel Visel

Co-authored papers 5

Ilene Karsch-Mizrachi

Co-authored papers 5

Elisha M Wood-Charlson

Lawrence Berkeley National Laboratory

Co-authored papers 5

Jonathan A Eisen

McLean Hospital

Co-authored papers 4

George M Garrity

Michigan State University

Co-authored papers 4

Christopher J Mungall

International Society for Biocuration, Lawrence Berkeley National Laboratory, University of Edinburgh, University of Edinburgh School of Biological Sciences

Co-authored papers 4

Patrick S G Chain

Los Alamos National Laboratory

Co-authored papers 4

Nicole Shapiro

Co-authored papers 4

Pelin Yilmaz

Co-authored papers 4

Claire M Fraser

Institute for Genome Sciences, University of Maryland School of Medicine

Co-authored papers 4

Rob Knight