Author details

Full Name

Su-In Lee

Affiliation

University of Washington

ORCID

Career Start Year

2003

Papers

H Index

Expertise

CM4AI Collaborator

Nevan J Krogan (CM4AI)

PMID	Paper Title	Journal Title	Published Year
37127711	Uncovering expression signatures of synergistic drug responses via ensembles of explainable machine-learning models.	Nat Biomed Eng	2023
37550579	Isolating salient variations of interest in single-cell data with contrastiveVI.	Nat Methods	2023
37292705	Dissection of medical AI reasoning processes via physician and generative-AI collaboration.	medRxiv	2023
37045821	Predictive and robust gene selection for spatial transcriptomics.	Nat Commun	2023
37076856	PAUSE: principled feature attribution for unsupervised gene expression analysis.	Genome Biol	2023
33818294	Epigenome-wide analysis of long-term air pollution exposure and DNA methylation in monocytes: results from the Multi-Ethnic Study of Atherosclerosis.	Epigenetics	2022
35769343	An automatic integrative method for learning interpretable communities of biological pathways.	NAR Genom Bioinform	2022
35393566	A cost-aware framework for the development of AI models for healthcare applications.	Nat Biomed Eng	2022
36204043	Interpretable machine learning prediction of all-cause mortality.	Commun Med (Lond)	2022
35922410	Explaining a series of models by propagating Shapley values.	Nat Commun	2022
33945818	Automated Detection of Glaucoma With Interpretable Machine Learning Using Clinical Data and Multimodal Retinal Images.	Am J Ophthalmol	2021
35419524	Course Corrections for Clinical AI.	Kidney360	2021
33596178	Efficient and Explainable Risk Assessments for Imminent Dementia in an Aging Cohort Study.	IEEE J Biomed Health Inform	2021
34880410	Forecasting adverse surgical events using self-supervised transfer learning for physiological signals.	NPJ Digit Med	2021
34462593	Reproducibility standards for machine learning in the life sciences.	Nat Methods	2021
34508095	Unified AI framework to uncover deep interrelationships between gene expression and Alzheimer's disease neuropathologies.	Nat Commun	2021
34232461	University of Washington Nathan Shock Center: innovation to advance aging research.	Geroscience	2021
32995822	AI for radiographic COVID-19 detection selects shortcuts over signal.	medRxiv	2020
33381842	Adversarial deconfounding autoencoder for learning robust gene expression embeddings.	Bioinformatics	2020
32607472	From Local Explanations to Global Understanding with Explainable AI for Trees.	Nat Mach Intell	2020
30869146	AIControl: replacing matched control experiments with machine learning improves ChIP-seq peak identification.	Nucleic Acids Res	2019
29298978	A machine learning approach to integrate big data for precision medicine in acute myeloid leukemia.	Nat Commun	2018
31001455	Explainable machine-learning predictions for the prevention of hypoxaemia during surgery.	Nat Biomed Eng	2018
30631343	Associations Between Genetic Data and Quantitative Assessment of Normal Facial Asymmetry.	Front Genet	2018
30441472	Identifying progressive gene network perturbation from single-cell RNA-seq data.	Annu Int Conf IEEE Eng Med Biol Soc	2018
26733551	A Distributed Network for Intensive Longitudinal Monitoring in Metastatic Triple-Negative Breast Cancer.	J Natl Compr Canc Netw	2016
27145341	Identifying Network Perturbation in Cancer.	PLoS Comput Biol	2016
27139377	ChromNet: Learning the human chromatin network from all ENCODE ChIP-seq data.	Genome Biol	2016
27287041	Extracting a low-dimensional description of multiple gene expression datasets reveals a potential driver for tumor-associated stroma in ovarian cancer.	Genome Med	2016
25583238	Sparse expression bases in cancer reveal tumor drivers.	Nucleic Acids Res	2015
28843283	The Proteomic Landscape of Triple-Negative Breast Cancer.	Cell Rep	2015
26167394	Pathway Graphical Lasso.	Proc AAAI Conf Artif Intell	2015
25892236	The proteomic landscape of triple-negative breast cancer.	Cell Rep	2015
25309137	Node-Based Learning of Multiple Gaussian Graphical Models.	J Mach Learn Res	2014
25620891	Learning Graphical Models With Hubs.	J Mach Learn Res	2014
24111127	The use of pseudo-landmarks for craniofacial analysis: a comparative study with Lâ¿-regularized logistic regression.	Annu Int Conf IEEE Eng Med Biol Soc	2013
25152933	Skull Retrieval for Craniosynostosis Using Sparse Logistic Regression Models.	Med Image Comput Comput Assist Interv	2013
22371081	Massively parallel functional dissection of mammalian enhancers in vivo.	Nat Biotechnol	2012
25360066	Structured Learning of Gaussian Graphical Models.	Adv Neural Inf Process Syst	2012
23366611	Parcellation of human inferior parietal lobule based on diffusion MRI.	Annu Int Conf IEEE Eng Med Biol Soc	2012
23087359	A systematic approach to multifactorial cardiovascular disease: causal analysis.	Arterioscler Thromb Vasc Biol	2012
21268112	Learning generative models for protein fold families.	Proteins	2011
21734270	Brn3a and Islet1 act epistatically to regulate the gene expression program of sensory differentiation.	J Neurosci	2011
19180192	Learning a prior on regulatory potential from eQTL data.	PLoS Genet	2009
19636063	A pluripotency signature predicts histologic transformation and influences survival in follicular lymphoma patients.	Blood	2009
16968785	Identifying regulatory mechanisms using individual variation reveals key role for chromatin modification.	Proc Natl Acad Sci U S A	2006
16372000	Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae.	Nature	2005
14611662	Application of independent component analysis to microarrays.	Genome Biol	2003

1 - 48 of 48

Jake Crawford

Perelman School of Medicine, University of Pennsylvania

Career Start Year 2018

Number of shared co-authors 1

Trang T Le

Institute for Biomedical Informatics, University of Pennsylvania

Career Start Year 2017

Number of shared co-authors 1

James Zou

Stanford University

Career Start Year 2016

Number of shared co-authors 3

Mehmet Eren Ahsen

Gies College of Business, University of Illinois at Urbana-Champaign.

Career Start Year 2015

Number of shared co-authors 1

Marinka Zitnik

Harvard Medical School

Career Start Year 2013

Number of shared co-authors 1

Kiley Graim

University of Florida.

Career Start Year 2013

Number of shared co-authors 1

Daifeng Wang

University of Wisconsin-Madison

Career Start Year 2012

Number of shared co-authors 1

Anna Goldenberg

SickKids Research Institute

Career Start Year 2011

Number of shared co-authors 3

Junhee Seok

Korea University

Career Start Year 2008

Number of shared co-authors 0

Yuanfang Guan

University of Michigan ann arbor

Career Start Year 2007

Number of shared co-authors 4

Eunjee Lee

Chungnam National University

Career Start Year 2007

Number of shared co-authors 2

Artem Sokolov

Harvard Medical School

Career Start Year 2006

Number of shared co-authors 2

Joel T Dudley

Institute for Next Generation Healthcare

Career Start Year 2006

Number of shared co-authors 4

Guanghua Xiao

The University of Texas Southwestern Medical Center

Career Start Year 2005

Number of shared co-authors 1

Dongxiao Zhu

Wayne State University

Career Start Year 2005

Number of shared co-authors 0

Holger Fr??hlich

Bonn-Aachen International Center for IT (B-IT), University of Bonn

Career Start Year 2004

Number of shared co-authors 2

Adam A Margolin

Icahn School of Medicine

Career Start Year 2004

Number of shared co-authors 6

Gerald Quon

University of California davis

Career Start Year 2003

Number of shared co-authors 4

Assaf Gottlieb

Center for Precision Health, University of Texas Health Science Center at Houston

Career Start Year 2002

Number of shared co-authors 1

Gil Alterovitz

Brigham and Women's Hospital

Career Start Year 2002

Number of shared co-authors 2

Olga G Troyanskaya

Lewis-Sigler Institute for Integrative Genomics, Princeton University

Career Start Year 2001

Number of shared co-authors 8

Joshua M Stuart

University of California at Santa Cruz

Career Start Year 2000

Number of shared co-authors 4

Frank Emmert-Streib

Tampere University

Career Start Year 2000

Number of shared co-authors 0

Blaz Zupan

University of Ljubljana

Career Start Year 1998

Number of shared co-authors 0

Cesare Furlanello

Bruno Kessler Foundation

Career Start Year 1996

Number of shared co-authors 1

Samuel Kaski

Aalto University

Career Start Year 1995

Number of shared co-authors 0

Atul J Butte

Bakar Computational Health Sciences Institute, University of California san francisco

Career Start Year 1993

Number of shared co-authors 2

Yuval Kluger

Yale University School of Medicine

Career Start Year 1984

Number of shared co-authors 1

Donald Geman

Johns Hopkins University

Career Start Year 1984

Number of shared co-authors 0

Rainer Spang

University of Regensburg

Career Start Year 1969

Number of shared co-authors 1

row(s) 1 - 30 of 30

Carl Anthony Blau

Center for Cancer Innovation, University of Washington

Co-authored papers 5

Benjamin A Logsdon

Fred Hutchinson Cancer Research Center

Co-authored papers 4

Daphne Koller

Stanford University

Co-authored papers 3

Judit Vill??n

University of Washington

Co-authored papers 3

Andrew J Gentles

Stanford Center for Biomedical Informatics Research, Stanford University

Co-authored papers 3

Aim??e M Dudley

Pacific Northwest Research Institute

Co-authored papers 2

Elizabeth M Perez

Co-authored papers 2

Michael M Hoffman

University of Toronto

Co-authored papers 2

Dana Pe'er

Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center

Co-authored papers 2

Serafim Batzoglou

Co-authored papers 2

Kelsey M Haas

J. David Gladstone Institutes

Co-authored papers 2

George M Church

Harvard Medical School

Co-authored papers 1

Sumit Mukherjee

Microsoft Corporation

Co-authored papers 1

Michael R Banitt

Bascom Palmer Eye Institute, University of Miami Miller School of Medicine

Co-authored papers 1

Magdalena Balazinska

University of Washington

Co-authored papers 1

Brian Raught

Princess Margaret Cancer Centre, University Health Network

Co-authored papers 1

Christine A Petersen

University of Washington

Co-authored papers 1

Jingchun Zhu

University of California at Santa Cruz

Co-authored papers 1

Nadav Ahituv

University of California san francisco

Co-authored papers 1

Sara Mostafavi

University of British Columbia and BC Children's Hospital

Co-authored papers 1

Nevan J Krogan (CM4AI)

University of California San Francisco

Co-authored papers 1

Nisha Bansal

Kidney Research Institute, University of Washington

Co-authored papers 1

Joanne C Wen

Duke University

Co-authored papers 1

Florian Markowetz

CRUK Cambridge Institute, University of Cambridge

Co-authored papers 1

Colin C Pritchard

University of Washington, USA Brotman Baty Institute for Precision Medicine

Co-authored papers 1

Michael J MacCoss

University of Washington

Co-authored papers 1

Brigham H Mecham

Center for Cancer Innovation, University of Washington

Co-authored papers 1

Janusz Dutkowski

Data4Cure Inc.

Co-authored papers 1

Linda Z Penn

University of Toronto

Co-authored papers 1

Benjamin J Heil

Perelman School of Medicine, University of Pennsylvania

Co-authored papers 1

1 - 30

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