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Author Details

Marie-Dominique Devignes
Universite de Lorraine, CNRS
1979
88
27
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36871056Molecular-evaluated and explainable drug repurposing for COVID-19 using ensemble knowledge graph embedding.Sci Rep2023
37393296FAIR-Checker: supporting digital resource findability and reuse with Knowledge Graphs and Semantic Web standards.J Biomed Semantics2023
36871056Molecular-evaluated and explainable drug repurposing for COVID-19 using ensemble knowledge graph embedding.Sci Rep2023
37431435CroMaSt: a workflow for assessing protein domain classification by cross-mapping of structural instances between domain databases and structural alignment.Bioinform Adv2023
37393296FAIR-Checker: supporting digital resource findability and reuse with Knowledge Graphs and Semantic Web standards.J Biomed Semantics2023
37431435CroMaSt: a workflow for assessing protein domain classification by cross-mapping of structural instances between domain databases and structural alignment.Bioinform Adv2023
34538625Machine Learning-Derived Echocardiographic Phenotypes Predict Heart Failure Incidence in Asymptomatic Individuals.JACC Cardiovasc Imaging2022
36182054Inductive database to support iterative data mining: Application to biomarker analysis on patient data in the Fight-HF project.J Biomed Inform2022
35754360Singular Interface Dynamics of the SARS-CoV-2 Delta Variant Explained with Contact Perturbation Analysis.J Chem Inf Model2022
36510133Improving automatic GO annotation with semantic similarity.BMC Bioinformatics2022
36600882NT-proBNP and stem cell factor plasma concentrations are independently associated with cardiovascular outcomes in end-stage renal disease hemodialysis patients.Eur Heart J Open2022
34538625Machine Learning-Derived Echocardiographic Phenotypes Predict Heart Failure Incidence in Asymptomatic Individuals.JACC Cardiovasc Imaging2022
35754360Singular Interface Dynamics of the SARS-CoV-2 Delta Variant Explained with Contact Perturbation Analysis.J Chem Inf Model2022
36510133Improving automatic GO annotation with semantic similarity.BMC Bioinformatics2022
36600882NT-proBNP and stem cell factor plasma concentrations are independently associated with cardiovascular outcomes in end-stage renal disease hemodialysis patients.Eur Heart J Open2022
36182054Inductive database to support iterative data mining: Application to biomarker analysis on patient data in the Fight-HF project.J Biomed Inform2022
34370723PPIDomainMiner: Inferring domain-domain interactions from multiple sources of protein-protein interactions.PLoS Comput Biol2021
33603019Head-to-head comparison of clustering methods for heterogeneous data: a simulation-driven benchmark.Sci Rep2021
34370723PPIDomainMiner: Inferring domain-domain interactions from multiple sources of protein-protein interactions.PLoS Comput Biol2021
33603019Head-to-head comparison of clustering methods for heterogeneous data: a simulation-driven benchmark.Sci Rep2021
31062082Plasma protein biomarkers and their association with mutually exclusive cardiovascular phenotypes: the FIBRO-TARGETS case-control analyses.Clin Res Cardiol2020
31593701Application of Artificial Intelligence to Gastroenterology and Hepatology.Gastroenterology2020
31896797PGxCorpus, a manually annotated corpus for pharmacogenomics.Sci Data2020
32063068Enhanced clinical phenotyping by mechanistic bioprofiling in heart failure with preserved ejection fraction: insights from the MEDIA-DHF study (The Metabolic Road to Diastolic Heart Failure).Biomarkers2020
31761405Insulin-like growth factor binding protein 2: A prognostic biomarker for heart failure hardly redundant with natriuretic peptides.Int J Cardiol2020
32567559Circulating plasma proteins and new-onset diabetes in a population-based study: proteomic and genomic insights from the STANISLAS cohort.Eur J Endocrinol2020
32831121Sex differences in circulating proteins in heart failure with preserved ejection fraction.Biol Sex Differ2020
31062082Plasma protein biomarkers and their association with mutually exclusive cardiovascular phenotypes: the FIBRO-TARGETS case-control analyses.Clin Res Cardiol2020
31896797PGxCorpus, a manually annotated corpus for pharmacogenomics.Sci Data2020
32063068Enhanced clinical phenotyping by mechanistic bioprofiling in heart failure with preserved ejection fraction: insights from the MEDIA-DHF study (The Metabolic Road to Diastolic Heart Failure).Biomarkers2020
31761405Insulin-like growth factor binding protein 2: A prognostic biomarker for heart failure hardly redundant with natriuretic peptides.Int J Cardiol2020
32831121Sex differences in circulating proteins in heart failure with preserved ejection fraction.Biol Sex Differ2020
32567559Circulating plasma proteins and new-onset diabetes in a population-based study: proteomic and genomic insights from the STANISLAS cohort.Eur J Endocrinol2020
31593701Application of Artificial Intelligence to Gastroenterology and Hepatology.Gastroenterology2020
31073337Characterization of a relaxase belonging to the MOB<sub>T</sub> family, a widespread family in Firmicutes mediating the transfer of ICEs.Mob DNA2019
31744546The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens.Genome Biol2019
31612567Blind prediction of homo- and hetero-protein complexes: The CASP13-CAPRI experiment.Proteins2019
31523903Extended persistence of antiphospholipid antibodies beyond the 12-week time interval: Association with baseline antiphospholipid antibodies titres.Int J Lab Hematol2019
31073337Characterization of a relaxase belonging to the MOB<sub>T</sub> family, a widespread family in Firmicutes mediating the transfer of ICEs.Mob DNA2019
31744546The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens.Genome Biol2019
31612567Blind prediction of homo- and hetero-protein complexes: The CASP13-CAPRI experiment.Proteins2019
31523903Extended persistence of antiphospholipid antibodies beyond the 12-week time interval: Association with baseline antiphospholipid antibodies titres.Int J Lab Hematol2019
30453875Computational discovery of direct associations between GO terms and protein domains.BMC Bioinformatics2018
30453875Computational discovery of direct associations between GO terms and protein domains.BMC Bioinformatics2018
27701764Modeling and minimizing CAPRI round 30 symmetrical protein complexes from CASP-11 structural models.Proteins2017
28373865A Glimpse into the World of Integrative and Mobilizable Elements in Streptococci Reveals an Unexpected Diversity and Novel Families of Mobilization Proteins.Front Microbiol2017
28830518Discovering associations between adverse drug events using pattern structures and ontologies.J Biomed Semantics2017
29109696Low-Dose Alkylphenol Exposure Promotes Mammary Epithelium Alterations and Transgenerational Developmental Defects, But Does Not Enhance Tumorigenic Behavior of Breast Cancer Cells.Front Endocrinol (Lausanne)2017
27701764Modeling and minimizing CAPRI round 30 symmetrical protein complexes from CASP-11 structural models.Proteins2017
28193156ECDomainMiner: discovering hidden associations between enzyme commission numbers and Pfam domains.BMC Bioinformatics2017
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Collaborators

Charles Auffray
European Institute for Systems Biology and Medicine
Co-authored papers 15
David W Ritchie
Universite de Lorraine, CNRS
Co-authored papers 14
Bernard Maigret
Universite de Lorraine, CNRS
Co-authored papers 8
Anisah W Ghoorah
University of Mauritius
Co-authored papers 7
Seyed Ziaeddin Alborzi
Universite de Lorraine, CNRS
Co-authored papers 5
Sabeur Aridhi
Universite de Lorraine, CNRS
Co-authored papers 4
Isaure Chauvot de Beauchêne
Co-authored papers 4
Daisuke Kihara
Purdue University
Co-authored papers 3
Sergei Grudinin
University Grenoble Alpes, CNRS
Co-authored papers 3
Jianlin Cheng
University of Missouri
Co-authored papers 3
Shoshana J Wodak
VIB-VUB Center for Structural Biology
Co-authored papers 2
Sheng-You Huang
Huazhong University of Science and Technology
Co-authored papers 2
Brian G Pierce
University of Maryland Institute for Bioscience and Biotechnology Research
Co-authored papers 2
Claire O'Donovan
European Bioinformatics Institute
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Jie Hou
Saint Louis University
Co-authored papers 2
Alexandre Mebazaa
INSERM UMR-S , Universite de Paris Cite
Co-authored papers 2
Adrien S J Melquiond
Oncode Institute & Hubrecht Institute-KNAW and University Medical Center Utrecht
Co-authored papers 2
Thom Vreven
Visterra Inc.
Co-authored papers 2
Xiaoqin Zou
Dalton Cardiovascular Research Center, University of Missouri
Co-authored papers 2
Li C Xue
Utrecht University
Co-authored papers 2
Ilya A Vakser
The University of Kansas
Co-authored papers 2
Brian Jim??nez-Garc??a
Utrecht University
Co-authored papers 2
Liming Qiu
Perelman School of Medicine, University of Pennsylvania
Co-authored papers 2
Manfred Gessler
Co-authored papers 2
Iain H Moal
GSK Medicines Research Centre
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Dmitri Beglov
Boston University
Co-authored papers 2
Zhiwei Ma
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Tyler Borrman
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Release 1.2