Author details

Full Name

L??on-Charles Tranchevent

Affiliation

University of Luxembourg

ORCID

Career Start Year

2006

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36681675	Systems level analysis of sex-dependent gene expression changes in Parkinson's disease.	NPJ Parkinsons Dis	2023
37420093	A multi-omics integrative approach unravels novel genes and pathways associated with senescence escape after targeted therapy in NRAS mutant melanoma.	Cancer Gene Ther	2023
34805149	iPSC-Derived Microglia as a Model to Study Inflammation in Idiopathic Parkinson's Disease.	Front Cell Dev Biol	2021
30962178	Interplay between coding and exonic splicing regulatory sequences.	Genome Res	2019
31856829	A deep neural network approach to predicting clinical outcomes of neuroblastoma patients.	BMC Med Genomics	2019
29632713	CD47 is a direct target of SNAI1 and ZEB1 and its blockade activates the phagocytosis of breast cancer cells undergoing EMT.	Oncoimmunology	2018
29880025	Predicting clinical outcome of neuroblastoma patients using an integrative network-based approach.	Biol Direct	2018
28420690	Identification of protein features encoded by alternative exons using Exon Ontology.	Genome Res	2017
27131783	Candidate gene prioritization with Endeavour.	Nucleic Acids Res	2016
26384564	Beegle: from literature mining to disease-gene discovery.	Nucleic Acids Res	2016
27604469	An expanded evaluation of protein function prediction methods shows an improvement in accuracy.	Genome Biol	2016
24275493	The Ddx5 and Ddx17 RNA helicases are cornerstones in the complex regulatory array of steroid hormone-signaling pathways.	Nucleic Acids Res	2014
24910439	RNA helicases DDX5 and DDX17 dynamically orchestrate transcription, miRNA, and splicing programs in cell differentiation.	Cell Rep	2014
24307554	Endothelial, epithelial, and fibroblast cells exhibit specific splicing programs independently of their tissue of origin.	Genome Res	2014
24076761	eXtasy: variant prioritization by genomic data fusion.	Nat Methods	2013
22067610	BMPR1A is a candidate gene for congenital heart defects associated with the recurrent 10q22q23 deletion syndrome.	Eur J Med Genet	2012
22962483	ReLiance: a machine learning and literature-based prioritization of receptor--ligand pairings.	Bioinformatics	2012
23013645	Annotate-it: a Swiss-knife approach to annotation, analysis and interpretation of single nucleotide variation in human disease.	Genome Med	2012
23047555	An unbiased evaluation of gene prioritization tools.	Bioinformatics	2012
22751426	Computational tools for prioritizing candidate genes: boosting disease gene discovery.	Nat Rev Genet	2012
22442124	Optimized data fusion for kernel k-means clustering.	IEEE Trans Pattern Anal Mach Intell	2012
22318985	Congenital heart defects in a novel recurrent 22q11.2 deletion harboring the genes CRKL and MAPK1.	Am J Med Genet A	2012
20980271	Optimized data fusion for K-means Laplacian clustering.	Bioinformatics	2011
21921585	Challenges of interpreting copy number variation in syndromic and non-syndromic congenital heart defects.	Cytogenet Genome Res	2011
21602267	PINTA: a web server for network-based gene prioritization from expression data.	Nucleic Acids Res	2011
21278374	A guide to web tools to prioritize candidate genes.	Brief Bioinform	2011
20074336	Gene prioritization and clustering by multi-view text mining.	BMC Bioinformatics	2010
20493459	Haploinsufficiency of TAB2 causes congenital heart defects in humans.	Am J Hum Genet	2010
20538729	Large-scale benchmark of Endeavour using MetaCore maps.	Bioinformatics	2010
20529363	L2-norm multiple kernel learning and its application to biomedical data fusion.	BMC Bioinformatics	2010
20193066	Collaboratively charting the gene-to-phenotype network of human congenital heart defects.	Genome Med	2010
20346121	Detection of novel 3' untranslated region extensions with 3' expression microarrays.	BMC Genomics	2010
19165344	Integrating computational biology and forward genetics in Drosophila.	PLoS Genet	2009
19436755	Network analysis of differential expression for the identification of disease-causing genes.	PLoS One	2009
18365009	Using ribosomal protein genes as reference: a tale of caution.	PLoS One	2008
18508807	ENDEAVOUR update: a web resource for gene prioritization in multiple species.	Nucleic Acids Res	2008
18689812	Comparison of vocabularies, representations and ranking algorithms for gene prioritization by text mining.	Bioinformatics	2008
17646288	Kernel-based data fusion for gene prioritization.	Bioinformatics	2007
16680138	Gene prioritization through genomic data fusion.	Nat Biotechnol	2006
17092029	Physical-chemistry-based analysis of affymetrix microarray data.	J Phys Chem B	2006

1 - 40 of 40

Marta Bleda

University of Cambridge School of Clinical Medicine

Career Start Year 2012

Number of shared co-authors 3

Yuanfang Guan

University of Michigan ann arbor

Career Start Year 2007

Number of shared co-authors 3

Peilin Jia

Center for Precision Health, The University of Texas Health Science Center at Houston

Career Start Year 2006

Number of shared co-authors 1

Andrey Alexeyenko

Karolinska Institutet

Career Start Year 2006

Number of shared co-authors 0

Arnaud Droit

Centre de Recherche du CHU de Quebec-Universite, Universite Laval

Career Start Year 2005

Number of shared co-authors 0

Avi Ma'ayan

Icahn School of Medicine at Mount Sinai

Career Start Year 2005

Number of shared co-authors 0

F??tima Al-Shahrour

Spanish National Cancer Research Centre (CNIO)

Career Start Year 2003

Number of shared co-authors 2

Andrey Sivachenko

Cystic Fibrosis Foundation

Career Start Year 2003

Number of shared co-authors 0

Quaid Morris

Sloan Kettering Institute

Career Start Year 2003

Number of shared co-authors 3

Jake Y. Chen (CM4AI)

University of Alabama at Birmingham

Career Start Year 2003

Number of shared co-authors 2

Johan Rung

Uppsala University

Career Start Year 2001

Number of shared co-authors 1

Olga G Troyanskaya

Lewis-Sigler Institute for Integrative Genomics, Princeton University

Career Start Year 2001

Number of shared co-authors 4

Hedi Peterson

Institute of Computer Science, University of Tartu

Career Start Year 2000

Number of shared co-authors 8

Steffen M??ller

Rostock University Medical Center

Career Start Year 1999

Number of shared co-authors 6

Igor Jurisica

Schroeder Arthritis Institute

Career Start Year 1998

Number of shared co-authors 1

Ralf Herwig

Max Planck Institute for Molecular Genetics

Career Start Year 1998

Number of shared co-authors 1

Zhongming Zhao

Center for Precision Health, The University of Texas Health Science Center at Houston

Career Start Year 1998

Number of shared co-authors 2

Michael R Barnes

William Harvey Research Institute, Queen Mary University of London

Career Start Year 1997

Number of shared co-authors 3

Jaak Vilo

Institute of Computer Science, University of Tartu

Career Start Year 1996

Number of shared co-authors 5

Damian Smedley

William Harvey Research Institute, Queen Mary University of London

Career Start Year 1996

Number of shared co-authors 8

Panayiotis V Benos

University of Florida

Career Start Year 1996

Number of shared co-authors 2

Georg Fuellen

Rostock University Medical Center

Career Start Year 1996

Number of shared co-authors 1

Ralf Zimmer

Ludwig-Maximilians-Universitat Munchen

Career Start Year 1995

Number of shared co-authors 0

Robert Gentleman

Center for Computational Biomedicine, Harvard Medical School

Career Start Year 1991

Number of shared co-authors 0

Winston Hide

Harvard Medical School

Career Start Year 1991

Number of shared co-authors 6

John Quackenbush

Harvard T. H. Chan School of Public Health

Career Start Year 1989

Number of shared co-authors 6

S??ren Brunak

Novo Nordisk Foundation Center for Protein Research, University of Copenhagen

Career Start Year 1988

Number of shared co-authors 16

Tatsuhiko Tsunoda

The University of Tokyo

Career Start Year 1984

Number of shared co-authors 0

Joaqu??n Dopazo

Andalusian Public Foundation Progress and Health-FPS

Career Start Year 1977

Number of shared co-authors 7

Rainer Spang

University of Regensburg

Career Start Year 1969

Number of shared co-authors 1

row(s) 1 - 30 of 30

Yves Moreau

KU Leuven - University of Leuven

Co-authored papers 28

Bart De Moor

STADIUS Center for Dynamical Systems

Co-authored papers 11

Peter Van Loo

The Francis Crick Institute

Co-authored papers 4

Amin Ardeshirdavani

STADIUS Center for Dynamical Systems

Co-authored papers 3

Bert Coessens

Katholieke Universiteit Leuven

Co-authored papers 3

Sarah ElShal

STADIUS Center for Dynamical Systems

Co-authored papers 3

Jan Aerts

Co-authored papers 3

Steven Van Vooren

Katholieke Universiteit Leuven

Co-authored papers 3

Bassem T Elhassan

Co-authored papers 2

Emilie Chautard

Universite de Lyon, Universite Claude Bernard, CNRS UMR 5239, INSERM U1210

Co-authored papers 2

Enrico Glaab

University of Luxembourg

Co-authored papers 2

Christopher Funk

University of Colorado School of Medicine

Co-authored papers 1

Prajwal Bhat

Royal Holloway University of London

Co-authored papers 1

Marco Mesiti

Universita degli Studi di Milano

Co-authored papers 1

Sanja Glisic

Vinca Institute of Nuclear Sciences, The University of Belgrade

Co-authored papers 1

Angela Del Pozo

Instituto de Genetica Medica y Molecular (INGEMM), Hospital Universitario La Paz

Co-authored papers 1

Maria J Martin

European Bioinformatics Institute (EMBL-EBI)

Co-authored papers 1

Christophe Dessimoz

University of Lausanne

Co-authored papers 1

Kai Hakala

University of Turku

Co-authored papers 1

Domenico Cozzetto

Imperial College London

Co-authored papers 1

Amos Stern

Life Science Institute

Co-authored papers 1

Shanshan Zhang

Temple University

Co-authored papers 1

Marina Marcet-Houben

Institute for Research in Biomedicine (IRB)

Co-authored papers 1

Hans J Vogel

University of Calgary

Co-authored papers 1

Reinhard Schneider

Co-authored papers 1

Pooya Zakeri

Aarhus University

Co-authored papers 1

Alfredo Benso

Italy Consorzio Interuniversitario Nazionale per l'Informatica

Co-authored papers 1

Federico Minneci

University College London

Co-authored papers 1

Elena Cibri??n-Uhalte

European Bioinformatics Institute

Co-authored papers 1

Malvika Sharan

The Alan Turing Institute

Co-authored papers 1

1 - 30

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