Author details

Full Name

Hiroshi Matsuo

Affiliation

Frederick National Laboratory for Cancer Research

ORCID

Career Start Year

1990

Papers

H Index

Expertise

CM4AI Collaborator

Nevan J Krogan (CM4AI)

PMID	Paper Title	Journal Title	Published Year
36827983	E6AP AZUL interaction with UBQLN1/2 in cells, condensates, and an AlphaFold-NMR integrated structure.	Structure	2023
37419875	Structural insights into RNA bridging between HIV-1 Vif and antiviral factor APOBEC3G.	Nat Commun	2023
37438348	Structural and photophysical characterization of the small ultra-red fluorescent protein.	Nat Commun	2023
36402773	Structure of the catalytically active APOBEC3G bound to a DNA oligonucleotide inhibitor reveals tetrahedral geometry of the transition state.	Nat Commun	2022
35617919	The CD8Î± hinge is intrinsically disordered with a dynamic exchange that includes proline cis-trans isomerization.	J Magn Reson	2022
35550909	HIV-1 VIF and human APOBEC3G interaction directly observed through molecular specific labeling using a new dual promotor vector.	J Magn Reson	2022
34171358	Structural basis of substrate specificity in human cytidine deaminase family APOBEC3s.	J Biol Chem	2021
33486429	Interactions of APOBEC3s with DNA and RNA.	Curr Opin Struct Biol	2021
34916494	Structure-guided bifunctional molecules hit a DEUBAD-lacking hRpn13 species upregulated in multiple myeloma.	Nat Commun	2021
32160516	An Extended Conformation for K48 Ubiquitin Chains Revealed by the hRpn2:Rpn13:K48-Diubiquitin Structure.	Structure	2020
33098858	Crystal Structure of a Soluble APOBEC3G Variant Suggests ssDNA to Bind in a Channel that Extends between the Two Domains.	J Mol Biol	2020
30457868	Structural Analysis of the Active Site and DNA Binding of Human Cytidine Deaminase APOBEC3B.	J Chem Theory Comput	2019
31424549	Mechanism for APOBEC3G catalytic exclusion of RNA and non-substrate DNA.	Nucleic Acids Res	2019
29760455	Substrate sequence selectivity of APOBEC3A implicates intra-DNA interactions.	Sci Rep	2018
29941968	Crystal structure of the catalytic domain of HIV-1 restriction factor APOBEC3G in complex with ssDNA.	Nat Commun	2018
28029777	Nanoscale Characterization of Interaction of APOBEC3G with RNA.	Biochemistry	2017
28302150	Identification of a tripartite interaction between the N-terminus of HIV-1 Vif and CBFÎ² that is critical for Vif function.	Retrovirology	2017
28452355	Crystal structure of APOBEC3A bound to single-stranded DNA reveals structural basis for cytidine deamination and specificity.	Nat Commun	2017
25665167	Negative thermal expansibility change for dissociation of lysozyme variant amyloid protofibril.	Electrophoresis	2015
25984970	Structure of the Vif-binding domain of the antiviral enzyme APOBEC3G.	Nat Struct Mol Biol	2015
23318957	Dispersed sites of HIV Vif-dependent polyubiquitination in the DNA deaminase APOBEC3F.	J Mol Biol	2013
23953399	Tyrosine/tyrosinate fluorescence at 700 MPa: a pressure unfolding study of chicken ovomucoid at pH 12.	Biophys Chem	2013
23685212	Crystal structure of the DNA cytosine deaminase APOBEC3F: the catalytically active and HIV-1 Vif-binding domain.	Structure	2013
23596292	Impact of H216 on the DNA binding and catalytic activities of the HIV restriction factor APOBEC3G.	J Virol	2013
22339877	Extensively hydrated but folded: a novel state of globular proteins stabilized at high pressure and low temperature.	Biophys J	2012
24832226	A Comparison of Two Single-Stranded DNA Binding Models by Mutational Analysis of APOBEC3G.	Biology (Basel)	2012
24832225	Free Energy Profile of APOBEC3G Protein Calculated by a Molecular Dynamics Simulation.	Biology (Basel)	2012
23145435	Electrochemical direct detection of DNA deamination catalyzed by APOBEC3G.	Chem Commun (Camb)	2012
22879380	Structure of the RNA claw of the DNA packaging motor of bacteriophage Î¦29.	Nucleic Acids Res	2012
22225805	Pressure-accelerated dissociation of amyloid fibrils in wild-type hen lysozyme.	Biophys J	2012
22276994	Cyclic peptide inhibitors of HIV-1 capsid-human lysyl-tRNA synthetase interaction.	ACS Chem Biol	2012
21430060	Identification of a single amino acid required for APOBEC3 antiretroviral cytidine deaminase activity.	J Virol	2011
20152150	Crystal structure of the APOBEC3G catalytic domain reveals potential oligomerization interfaces.	Structure	2010
20971849	A single amino acid in human APOBEC3F alters susceptibility to HIV-1 Vif.	J Biol Chem	2010
19191709	Synthesis of deoxytetrahydrouridine.	J Org Chem	2009
27857574	The pressure-temperature phase diagram of hen lysozyme at low pH.	Biophysics (Nagoya-shi)	2009
19389408	An extended structure of the APOBEC3G catalytic domain suggests a unique holoenzyme model.	J Mol Biol	2009
18084020	Analysis of intermolecular base pair formation of prohead RNA of the phage phi29 DNA packaging motor using NMR spectroscopy.	Nucleic Acids Res	2008
18667511	Two regions within the amino-terminal half of APOBEC3G cooperate to determine cytoplasmic localization.	J Virol	2008
18227428	Solution NMR structure of the N-terminal domain of the human DEK protein.	Protein Sci	2008
18288108	Structure of the DNA deaminase domain of the HIV-1 restriction factor APOBEC3G.	Nature	2008
18188150	Molecular structure of the ParM polymer and the mechanism leading to its nucleotide-driven dynamic instability.	EMBO J	2008
17724017	Critical role of helix 4 of HIV-1 capsid C-terminal domain in interactions with human lysyl-tRNA synthetase.	J Biol Chem	2007
17869248	Extensive mutagenesis experiments corroborate a structural model for the DNA deaminase domain of APOBEC3G.	FEBS Lett	2007
16894028	Apoptosis inhibition by the human DEK oncoprotein involves interference with p53 functions.	Mol Cell Biol	2006
16738602	Dancin' deaminase.	Nat Struct Mol Biol	2006
15692740	NMR resonance assignments for the DNA-supercoiling domain of the human protein DEK.	J Biomol NMR	2005
15722484	The SAF-box domain of chromatin protein DEK.	Nucleic Acids Res	2005
15766865	Expression and isotopic labeling of structural domains of the human protein DEK.	Protein Expr Purif	2005
15238633	Solution NMR structure of the C-terminal domain of the human protein DEK.	Protein Sci	2004

1 - 50 of 68

Ivaylo Ivanov

Georgia State University, GA 30302 USA Center for Diagnostics and Therapeutics

Career Start Year 2002

Number of shared co-authors 1

Brian P Hudson

The State University of New Jersey

Career Start Year 2000

Number of shared co-authors 0

Takashi Nagata

Institute of Advanced Energy, Kyoto University

Career Start Year 1996

Number of shared co-authors 0

Mark W Maciejewski

University of Connecticut School of Medicine

Career Start Year 1995

Number of shared co-authors 1

Ram??n Campos-Olivas

Spanish National Cancer Research Centre (CNIO)

Career Start Year 1995

Number of shared co-authors 0

Michael A Kennedy

Miami University

Career Start Year 1993

Number of shared co-authors 1

Maria R Conte

King's College London

Career Start Year 1993

Number of shared co-authors 1

Yunyu Shi

University of Science & Technology of China

Career Start Year 1993

Number of shared co-authors 0

Michael Sattler

Technical University of Munich, Institute of Structural Biology

Career Start Year 1991

Number of shared co-authors 1

Cheryl H Arrowsmith

University of Toronto

Career Start Year 1989

Number of shared co-authors 3

P??r Nordlund

Karolinska Institutet, BioClinicum J6

Career Start Year 1989

Number of shared co-authors 0

Steven C Almo

Albert Einstein College of Medicine

Career Start Year 1988

Number of shared co-authors 0

David Neuhaus

Medical Research Council - Laboratory of Molecular Biology

Career Start Year 1984

Number of shared co-authors 1

Lu-Yun Lian

Institute of Systems, The University of Liverpool

Career Start Year 1984

Number of shared co-authors 1

Thomas A Frenkiel

The Medical Research Council Biomedical NMR Centre, The Francis Crick Institute

Career Start Year 1984

Number of shared co-authors 1

Walter J Chazin

and Center for Structural Biology, Vanderbilt University

Career Start Year 1982

Number of shared co-authors 1

Mamoru Sato

Yokohama City University

Career Start Year 1982

Number of shared co-authors 0

Stephen K Burley

The State University of New Jersey

Career Start Year 1982

Number of shared co-authors 2

Peter Bayer

University of Duisburg-Essen

Career Start Year 1981

Number of shared co-authors 1

Gaetano T Montelione

Rensselaer Polytechnic Institute

Career Start Year 1981

Number of shared co-authors 1

Angela M Gronenborn

University of Pittsburgh

Career Start Year 1980

Number of shared co-authors 2

Udo Heinemann

Max-Delbruck-Center for Molecular Medicine in the Helmholtz Association (MDC)

Career Start Year 1980

Number of shared co-authors 0

Rolf Boelens

Utrecht University

Career Start Year 1979

Number of shared co-authors 1

Shigeyuki Yokoyama

Shinshu University School of Medicine

Career Start Year 1979

Number of shared co-authors 5

Robert Kaptein

Utrecht University

Career Start Year 1978

Number of shared co-authors 2

Mark R Sanderson

King's College

Career Start Year 1978

Number of shared co-authors 1

Gordon S Rule

Carnegie Mellon University

Career Start Year 1978

Number of shared co-authors 1

Dinshaw J Patel

Memorial Sloan-Kettering Cancer Center

Career Start Year 1969

Number of shared co-authors 0

Helen M Berman

The State University of New Jersey

Career Start Year 1967

Number of shared co-authors 1

Sung-Hou Kim

University of California berkeley

Career Start Year 1967

Number of shared co-authors 0

row(s) 1 - 30 of 30

Celia A Schiffer

University of Massachusetts Chan Medical School

Co-authored papers 13

Reuben S Harris

University of Texas Health San Antonio

Co-authored papers 13

Elena Harjes

Massey University

Co-authored papers 9

Kylie J Walters

Center for Cancer Research, National Cancer Institute, National Institutes of Health

Co-authored papers 6

Keisuke Shindo

Graduate School of Medicine, Kyoto University

Co-authored papers 6

Mohan Somasundaran

University of Massachusetts Chan Medical School

Co-authored papers 4

Ming Li

Department of Cancer Research Institute, University of South Australia

Co-authored papers 4

Shivender M D Shandilya

University of Massachusetts Medical School

Co-authored papers 4

John S Albin

Massachusetts General Hospital

Co-authored papers 3

William L Brown

University of Minnesota

Co-authored papers 2

Markus-Frederik Bohn

Department of Pharmaceutical Chemistry, University of California San Francisco

Co-authored papers 2

John D Gross

Department of Pharmaceutical Chemistry, University of California san francisco

Co-authored papers 2

Anne-Claude Gingras

Lunenfeld-Tanenbaum Research Institute

Co-authored papers 2

Michael A Carpenter

University of Minnesota

Co-authored papers 1

Jessica L Smith

Vaccine and Gene Therapy Institute, Oregon Health and Science University

Co-authored papers 1

Partho Ghosh

University of California

Co-authored papers 1

Volker D??tsch

Institute for Biophysical Chemistry, Goethe-University

Co-authored papers 1

Nevan J Krogan (CM4AI)

University of California San Francisco

Co-authored papers 1

Jeffrey R Johnson

Gladstone Institutes

Co-authored papers 1

Raj Chari

The National Institutes of Health

Co-authored papers 1

Mary Munson

University of Massachusetts Chan Medical School

Co-authored papers 1

James J Chou

Harvard Medical School

Co-authored papers 1

Brett D Anderson

University of Minnesota

Co-authored papers 1

Rebecca S LaRue

Minnesota Supercomputing Institute, University of Minnesota

Co-authored papers 1

Charles D Schwieters

National Institute of Diabetes and Digestive and Kidney Diseases

Co-authored papers 1

Marc C Morais

University of Texas Medical Branch

Co-authored papers 1

Anurag Rathore

Aaron Diamond AIDS Research Center, Columbia University Irving Medical Center

Co-authored papers 1

John S Anderson

Co-authored papers 1

Roger Y Tsien

University of California

Co-authored papers 1

1 - 29

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