Skip to Main Content

Author Details

Terence P Speed
Walter and Eliza Hall Institute of Medical Research
2003
30
21
PMIDPaper TitleJournal TitlePublished Year
37365517An open protocol for modeling T Cell Clonotype repertoires using TCRβ CDR3 sequences.BMC Genomics2023
37365517An open protocol for modeling T Cell Clonotype repertoires using TCRβ CDR3 sequences.BMC Genomics2023
35697807Estimation of tumor cell total mRNA expression in 15 cancer types predicts disease progression.Nat Biotechnol2022
35697807Estimation of tumor cell total mRNA expression in 15 cancer types predicts disease progression.Nat Biotechnol2022
34644528A mouse-specific retrotransposon drives a conserved Cdk2ap1 isoform essential for development.Cell2021
34644528A mouse-specific retrotransposon drives a conserved Cdk2ap1 isoform essential for development.Cell2021
32567229scClassify: sample size estimation and multiscale classification of cells using single and multiple reference.Mol Syst Biol2020
33261552Finding a suitable library size to call variants in RNA-Seq.BMC Bioinformatics2020
32690135Changes in ferrous iron and glutathione promote ferroptosis and frailty in aging <i>Caenorhabditis elegans</i>.Elife2020
32732981Strategies to enable large-scale proteomics for reproducible research.Nat Commun2020
32567229scClassify: sample size estimation and multiscale classification of cells using single and multiple reference.Mol Syst Biol2020
32894218Removing unwanted variation with CytofRUV to integrate multiple CyTOF datasets.Elife2020
33261552Finding a suitable library size to call variants in RNA-Seq.BMC Bioinformatics2020
32690135Changes in ferrous iron and glutathione promote ferroptosis and frailty in aging <i>Caenorhabditis elegans</i>.Elife2020
32732981Strategies to enable large-scale proteomics for reproducible research.Nat Commun2020
32894218Removing unwanted variation with CytofRUV to integrate multiple CyTOF datasets.Elife2020
31028141scMerge leverages factor analysis, stable expression, and pseudoreplication to merge multiple single-cell RNA-seq datasets.Proc Natl Acad Sci U S A2019
31028141scMerge leverages factor analysis, stable expression, and pseudoreplication to merge multiple single-cell RNA-seq datasets.Proc Natl Acad Sci U S A2019
31114909A new normalization for Nanostring nCounter gene expression data.Nucleic Acids Res2019
31197307DECENT: differential expression with capture efficiency adjustmeNT for single-cell RNA-seq data.Bioinformatics2019
31531674Evaluating stably expressed genes in single cells.Gigascience2019
31531674Evaluating stably expressed genes in single cells.Gigascience2019
31197307DECENT: differential expression with capture efficiency adjustmeNT for single-cell RNA-seq data.Bioinformatics2019
31114909A new normalization for Nanostring nCounter gene expression data.Nucleic Acids Res2019
30571257Dysregulated IL-1β-GM-CSF Axis in Acute Rheumatic Fever That Is Limited by Hydroxychloroquine.Circulation2018
30571257Dysregulated IL-1β-GM-CSF Axis in Acute Rheumatic Fever That Is Limited by Hydroxychloroquine.Circulation2018
24532687A positive feedback between p53 and miR-34 miRNAs mediates tumor suppression.Genes Dev2014
24532687A positive feedback between p53 and miR-34 miRNAs mediates tumor suppression.Genes Dev2014
24137534A component of the mir-17-92 polycistronic oncomir promotes oncogene-dependent apoptosis.Elife2013
24137534A component of the mir-17-92 polycistronic oncomir promotes oncogene-dependent apoptosis.Elife2013
22003129Subtype and pathway specific responses to anticancer compounds in breast cancer.Proc Natl Acad Sci U S A2012
22923301Bayesian inference of signaling network topology in a cancer cell line.Bioinformatics2012
22003129Subtype and pathway specific responses to anticancer compounds in breast cancer.Proc Natl Acad Sci U S A2012
22923301Bayesian inference of signaling network topology in a cancer cell line.Bioinformatics2012
21436879Unifying gene expression measures from multiple platforms using factor analysis.PLoS One2011
21436879Unifying gene expression measures from multiple platforms using factor analysis.PLoS One2011
21408189Copy number variation in patients with disorders of sex development due to 46,XY gonadal dysgenesis.PLoS One2011
22174235Mathematics. A correlation for the 21st century.Science2011
22174235Mathematics. A correlation for the 21st century.Science2011
21408189Copy number variation in patients with disorders of sex development due to 46,XY gonadal dysgenesis.PLoS One2011
20235785Conference Scene: Lessons learned from the 5th Statistical Analysis Workshop of the Pharmacogenetics Research Network.Pharmacogenomics2010
20129251Integrated genomic analysis identifies clinically relevant subtypes of glioblastoma characterized by abnormalities in PDGFRA, IDH1, EGFR, and NF1.Cancer Cell2010
20605923Exon-level microarray analyses identify alternative splicing programs in breast cancer.Mol Cancer Res2010
20235785Conference Scene: Lessons learned from the 5th Statistical Analysis Workshop of the Pharmacogenetics Research Network.Pharmacogenomics2010
20605923Exon-level microarray analyses identify alternative splicing programs in breast cancer.Mol Cancer Res2010
20129251Integrated genomic analysis identifies clinically relevant subtypes of glioblastoma characterized by abnormalities in PDGFRA, IDH1, EGFR, and NF1.Cancer Cell2010
19038985Sparse combinatorial inference with an application in cancer biology.Bioinformatics2009
19038985Sparse combinatorial inference with an application in cancer biology.Bioinformatics2009
20048382Microarrays.Stat Methods Med Res2009
20019271Time for DNA disclosure.Science2009
  • 1 - 50 of 60

Recommended Authors

The Walter and Eliza Hall Institute of Medical Research
Career Start Year 2011
Number of shared co-authors 2
University of North Carolina at Chapel Hill
Career Start Year 2011
Number of shared co-authors 4
Johns Hopkins Bloomberg School of Public Health
Career Start Year 2011
Number of shared co-authors 0
Johns Hopkins University School of Medicine
Career Start Year 2010
Number of shared co-authors 8
The University of Melbourne
Career Start Year 2006
Number of shared co-authors 2
University of Colorado Anschutz Medical Campus
Career Start Year 2006
Number of shared co-authors 6
University of Pittsburgh
Career Start Year 2005
Number of shared co-authors 0
Australian Institute for Bioengineering and Nanotechnology, University of Queensland
Career Start Year 2005
Number of shared co-authors 0
Cancer Research UK Cambridge Institute, University of Cambridge
Career Start Year 2004
Number of shared co-authors 5
Jan and Dan Duncan Neurological Research Institute at Texas Children's Hospital
Career Start Year 2003
Number of shared co-authors 3
CRUK Cambridge Institute, University of Cambridge
Career Start Year 2003
Number of shared co-authors 2
University of California davis
Career Start Year 2003
Number of shared co-authors 2
Virginia Commonwealth University
Career Start Year 2001
Number of shared co-authors 0
Institute for Systems Biology
Career Start Year 2001
Number of shared co-authors 22
Amsterdam University Medical Centers (Amsterdam UMC)
Career Start Year 2001
Number of shared co-authors 1
Dana-Farber Cancer Institute
Career Start Year 2001
Number of shared co-authors 4
Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center
Career Start Year 2000
Number of shared co-authors 5
University of Wisconsin-Madison
Career Start Year 1999
Number of shared co-authors 0
University of Zurich
Career Start Year 1997
Number of shared co-authors 2
Oregon Health & Science University, University of California Berkeley
Career Start Year 1997
Number of shared co-authors 4
Technische Universitat Munchen
Career Start Year 1995
Number of shared co-authors 6
Technical University of Munich
Career Start Year 1992
Number of shared co-authors 1
The University of Texas MD Anderson Cancer Center
Career Start Year 1991
Number of shared co-authors 9
Center for Computational Biomedicine, Harvard Medical School
Career Start Year 1991
Number of shared co-authors 6
Medical College of Georgia
Career Start Year 1990
Number of shared co-authors 7
Harvard T. H. Chan School of Public Health
Career Start Year 1989
Number of shared co-authors 7
The College of New Jersey
Career Start Year 1988
Number of shared co-authors 1
Broad Institute of MIT and Harvard
Career Start Year 1987
Number of shared co-authors 9
Yale University School of Medicine
Career Start Year 1984
Number of shared co-authors 2
University of Regensburg
Career Start Year 1969
Number of shared co-authors 0

Collaborators

Oregon Health & Science University Hospital.
Co-authored papers 7
Oregon Health and Science University
Co-authored papers 6
The University of Sydney
Co-authored papers 4
Co-authored papers 4
Co-authored papers 3
Co-authored papers 3
The University of Melbourne
Co-authored papers 2
Co-authored papers 2
Genentech Inc.
Co-authored papers 2
Co-authored papers 2
Yale School of Medicine
Co-authored papers 2
Contextual Genomics Inc.
Co-authored papers 2
Oregon Health Sciences University
Co-authored papers 2
Knight Cancer Institute, Oregon Health and Sciences University
Co-authored papers 2
The University of Texas MD Anderson Cancer Center
Co-authored papers 1
University of California San Francisco
Co-authored papers 1
Yale University School of Medicine
Co-authored papers 1
Bakar Computational Health Sciences Institute, University of California san francisco
Co-authored papers 1
Icahn School of Medicine
Co-authored papers 1
the University of Texas MD Anderson Cancer Center
Co-authored papers 1
The University of Texas MD Anderson Cancer Center
Co-authored papers 1
Co-authored papers 1
Co-authored papers 1
The University of Texas MD Anderson Cancer Center
Co-authored papers 1
The University of Texas MD Anderson Cancer Center
Co-authored papers 1
The University of Texas MD Anderson Cancer Center
Co-authored papers 1
University of Toronto
Co-authored papers 1
Mayo Clinic
Co-authored papers 1
The University of Texas MD Anderson Cancer Center
Co-authored papers 1
Broad Institute of MIT and Harvard
Co-authored papers 1