Author details

Full Name

Brian J Beliveau

Affiliation

ORCID

Career Start Year

2012

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37419111	Spatial and temporal organization of the genome: Current state and future aims of the 4D nucleome project.	Mol Cell	2023
36261634	Optimized single-nucleus transcriptional profiling by combinatorial indexing.	Nat Protoc	2023
36778496	Programmable peroxidase-assisted signal amplification enables flexible detection of nucleic acid targets in cellular and histopathological specimens.	bioRxiv	2023
36711823	Oligonucleotide-directed proximity-interactome mapping (O-MAP): A unified method for discovering RNA-interacting proteins, transcripts and genomic loci .		2023
36945528	Tigerfish designs oligonucleotide-based hybridization probes targeting intervals of highly repetitive DNA at the scale of genomes.		2023
36669113	Cohesin controls X chromosome structure remodeling and X-reactivation during mouse iPSC-reprogramming.	Proc Natl Acad Sci U S A	2023
35545715	A hybrid open-top light-sheet microscope for versatile multi-scale imaging of cleared tissues.	Nat Methods	2022
35959194	An open source 16-channel fluidics system for automating sequential fluorescent hybridization (FISH)-based imaging.	HardwareX	2022
34480162	Author Correction: PaintSHOP enables the interactive design of transcriptome- and genome-scale oligonucleotide FISH experiments.	Nature Methods	2021
34226720	PaintSHOP enables the interactive design of transcriptome- and genome-scale oligonucleotide FISH experiments.	Nature Methods	2021
32719531	3D mapping and accelerated super-resolution imaging of the human genome using in situ sequencing.	Nat Methods	2020
32203508	Pericentromeric heterochromatin is hierarchically organized and spatially contacts H3K9me2 islands in euchromatin.	PLoS Genet	2020
32313927	OligoMinerApp: a web-server application for the design of genome-scale oligonucleotide in situ hybridization probes through the flexible OligoMiner environment.	Nucleic Acids Res	2020
32542832	Combining Qdot Nanotechnology and DNA Nanotechnology for Sensitive Single-Cell Imaging.	Advanced Materials	2020
31110282	SABER amplifies FISH: enhanced multiplexed imaging of RNA and DNA in cells and tissues.	Nat Methods	2019
31713635	Rapid in vitro production of single-stranded DNA.	Nucleic Acids Res	2019
31086362	Islands of retroelements are major components of Drosophila centromeres.	PLoS Biology	2019
31427819	Immuno-SABER enables highly multiplexed and amplified protein imaging in tissues.	Nat Biotechnol	2019
29463736	OligoMiner provides a rapid, flexible environment for the design of genome-scale oligonucleotide in situ hybridization probes.	Proc Natl Acad Sci U S A	2018
30586358	Walking along chromosomes with super-resolution imaging, contact maps, and integrative modeling.	PLoS Genet	2018
29233999	Multiplexed 3D super-resolution imaging of whole cells using spinning disk confocal microscopy and DNA-PAINT.	Nat Commun	2017
28924672	In Situ Super-Resolution Imaging of Genomic DNA with OligoSTORM and OligoDNA-PAINT.	Methods Mol Biol	2017
27445307	Spatial organization of chromatin domains and compartments in single chromosomes.	Science	2016
26760202	Super-resolution imaging reveals distinct chromatin folding for different epigenetic states.	Nature	2016
26054766	Combined in vitro transcription and reverse transcription to amplify and label complex synthetic oligonucleotide probe libraries.	BioTechniques	2015
25745023	Avoiding the ends: internal epitope tagging of proteins using transposon Tn7.	Genetics	2015
25858912	Allelic Imbalance Is a Prevalent and Tissue-Specific Feature of the Mouse Transcriptome.	Genetics	2015
25962338	Single-molecule super-resolution imaging of chromosomes and in situ haplotype visualization using Oligopaint FISH probes.	Nat Commun	2015
26567534	Scalable amplification of strand subsets from chip-synthesized oligonucleotide libraries.	Nature Communications	2015
24510436	Visualizing genomes with Oligopaint FISH probes.	Curr Protoc Mol Biol	2014
24385920	Germline progenitors escape the widespread phenomenon of homolog pairing during Drosophila development.	PLoS Genet	2013
23236188	Versatile design and synthesis platform for visualizing genomes with Oligopaint FISH probes.	Proc Natl Acad Sci U S A	2012