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Author Details

Ivo Gut
Spain Universitat de Barcelona (UB)
1991
271
83
PMIDPaper TitleJournal TitlePublished Year
38030727Identification of constrained sequence elements across 239 primate genomes.Nature2024
38035971Convert-Pheno: A software toolkit for the interconversion of standard data models for phenotypic data.J Biomed Inform2024
37450374Germ line variants in patients with acute myeloid leukemia without a suspicion of hereditary hematologic malignancy syndrome.Blood Adv2023
38010338Development of a novel streamlined workflow (AACRE) and database (inCREDBle) for genomic analysis of carbapenem-resistant Enterobacterales.Microb Genom2023
37850903A chromosome-level reference genome for the common octopus, Octopus vulgaris (Cuvier, 1797).G3 (Bethesda)2023
37351572A critical spotlight on the paradigms of FFPE-DNA sequencing.Nucleic Acids Res2023
34688835Emergence of 16S rRNA methyltransferases among carbapenemase-producing Enterobacterales in Spain studied by whole-genome sequencing.Int J Antimicrob Agents2022
36202811A method for multiplexed full-length single-molecule sequencing of the human mitochondrial genome.Nat Commun2022
36252012The ulcerative colitis-associated gene FUT8 regulates the quantity and quality of secreted mucins.Proc Natl Acad Sci U S A2022
33820833Phenotypic spectrum and genomics of undiagnosed arthrogryposis multiplex congenita.J Med Genet2022
34050148Impact of DNA methylation on 3D genome structure.Nat Commun2021
35544166Lung microbiome composition and bronchial epithelial gene expression in patients with COPD versus healthy individuals: a bacterial 16S rRNA gene sequencing and host transcriptomic analysis.Lancet Microbe2021
33792947Variation in predicted COVID-19 risk among lemurs and lorises.Am J Primatol2021
33544846SPOTlight: seeded NMF regression to deconvolute spatial transcriptomics spots with single-cell transcriptomes.Nucleic Acids Res2021
33510161Dynamics of genome architecture and chromatin function during human B cell differentiation and neoplastic transformation.Nat Commun2021
33980650Occurrence of the <i>p019</i> Gene in the <i>bla</i><sub>KPC</sub>-Harboring Plasmids: Adverse Clinical Impact for Direct Tracking of KPC-Producing <i>Klebsiella pneumoniae</i> by Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry.J Clin Microbiol2021
34145303Gender specific airway gene expression in COPD sub-phenotypes supports a role of mitochondria and of different types of leukocytes.Sci Rep2021
33952594An Improved Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry Data Analysis Pipeline for the Identification of Carbapenemase-Producing Klebsiella pneumoniae.J Clin Microbiol2021
31506971Blood eosinophil count and airway epithelial transcriptome relationships in COPD versus asthma.Allergy2020
34367618The ELIXIR Human Copy Number Variations Community: building bioinformatics infrastructure for research.F1000Res2020
31699806Resistome analyses of sputum from COPD and healthy subjects reveals bacterial load-related prevalence of target genes.Thorax2020
33028839Framework for quality assessment of whole genome cancer sequences.Nat Commun2020
33100219Genomic evidence for recurrent genetic admixture during the domestication of Mediterranean olive trees (Olea europaea L.).BMC Biol2020
32817379Tracking of Antibiotic Resistance Transfer and Rapid Plasmid Evolution in a Hospital Setting by Nanopore Sequencing.mSphere2020
32814051Alternative Enhancer Usage and Targeted Polycomb Marking Hallmark Promoter Choice during T Cell Differentiation.Cell Rep2020
32667968Blueprint of human thymopoiesis reveals molecular mechanisms of stage-specific TCR enhancer activation.J Exp Med2020
32518403Benchmarking single-cell RNA-sequencing protocols for cell atlas projects.Nat Biotechnol2020
30700761Clonal dynamics monitoring during clinical evolution in chronic lymphocytic leukaemia.Sci Rep2019
31645421The Genome Sequence of the Eastern Woodchuck (<i>Marmota monax</i>) - A Preclinical Animal Model for Chronic Hepatitis B.G3 (Bethesda)2019
31882973High degree of polyclonality hinders somatic mutation calling in lung brush samples of COPD cases and controls.Sci Rep2019
31765368Recurrent somatic mutations reveal new insights into consequences of mutagenic processes in cancer.PLoS Comput Biol2019
30137223gemBS: high throughput processing for DNA methylation data from bisulfite sequencing.Bioinformatics2019
30245085Mutational Profile of Aggressive, Localised Prostate Cancer from African Caribbean Men Versus European Ancestry Men.Eur Urol2019
31520075Author Correction: Leveraging European infrastructures to access 1 million human genomes by 2022.Nat Rev Genet2019
31455890Leveraging European infrastructures to access 1 million human genomes by 2022.Nat Rev Genet2019
31451731Pheno-seq - linking visual features and gene expression in 3D cell culture systems.Sci Rep2019
30988298Partially methylated domains are hypervariable in breast cancer and fuel widespread CpG island hypermethylation.Nat Commun2019
30842494Systems Genetics of Hepatic Metabolome Reveals Octopamine as a Target for Non-Alcoholic Fatty Liver Disease Treatment.Sci Rep2019
30860479Single cell RNA-seq identifies the origins of heterogeneity in efficient cell transdifferentiation and reprogramming.Elife2019
30799488Labelled regulatory elements are pervasive features of the macrophage genome and are dynamically utilized by classical and alternative polarization signals.Nucleic Acids Res2019
30602775Selective single molecule sequencing and assembly of a human Y chromosome of African origin.Nat Commun2019
30673601Chromatin-Based Classification of Genetically Heterogeneous AMLs into Two Distinct Subtypes with Diverse Stemness Phenotypes.Cell Rep2019
29311744Mutations in Vps15 perturb neuronal migration in mice and are associated with neurodevelopmental disease in humans.Nat Neurosci2018
30100403Epigenetic prediction of response to anti-PD-1 treatment in non-small-cell lung cancer: a multicentre, retrospective analysis.Lancet Respir Med2018
30184510Dynamics of Transcription Regulation in Human Bone Marrow Myeloid Differentiation to Mature Blood Neutrophils.Cell Rep2018
29876014Multi-omics profiling reveals a distinctive epigenome signature for high-risk acute promyelocytic leukemia.Oncotarget2018
29876013Combined HAT/EZH2 modulation leads to cancer-selective cell death.Oncotarget2018
29875394Publisher Correction: Mutations in Vps15 perturb neuronal migration in mice and are associated with neurodevelopmental disease in humans.Nat Neurosci2018
30220521Transcription Factors Drive Tet2-Mediated Enhancer Demethylation to Reprogram Cell Fate.Cell Stem Cell2018
30526885Transcription Factors Drive Tet2-Mediated Enhancer Demethylation to Reprogram Cell Fate.Cell Stem Cell2018
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Collaborators

Marta Gut
Universitat de Barcelona (UB)
Co-authored papers 92
Simon Heath
Barcelona Institute of Science and Technology (BIST)
Co-authored papers 55
Mark Lathrop
Victor Philip Dahdaleh Institute of Genomic Medicine at McGill University
Co-authored papers 30
J??rg Tost
CEA-Institut de Biologie Francois Jacob, Universite Paris-Saclay
Co-authored papers 29
Sergi Beltran
Hospital Universitari Vall d'Hebron
Co-authored papers 21
Hendrik G Stunnenberg
Co-authored papers 18
Paul Flicek
European Bioinformatics Institute
Co-authored papers 18
Diana Zelenika
Co-authored papers 16
Alfonso Valencia
Josep Carreras Leukaemia Research Institute (IJC)
Co-authored papers 12
Sophia Derdak
Medical University of Vienna
Co-authored papers 12
Tyler Alioto
Universitat de Barcelona (UB)
Co-authored papers 12
Martin Farrall
Co-authored papers 11
Joost H A Martens
Co-authored papers 11
Elias Campo
Institute for Biomedical Research August Pi I Sunyer
Co-authored papers 10
Laura Clarke
Co-authored papers 10
Romain Fenouil
Universite de Toulon, CNRS
Co-authored papers 10
Holger Heyn
Barcelona Institute of Science and Technology, Spain Universitat Pompeu Fabra
Co-authored papers 9
Stephan Beck
UCL Cancer Institute, University College London
Co-authored papers 9
G M Lathrop
Co-authored papers 9
Tomas Marques-Bonet
University of California san francisco
Co-authored papers 9
Emanuele Raineri
Barcelona Institute of Science and Technology (BIST)
Co-authored papers 8
Patricia Price
Co-authored papers 7
Carlos L??pez-Ot??n
Instituto Universitario de Oncologia, Universidad de Oviedo
Co-authored papers 6
Willem H Ouwehand
University of Cambridge
Co-authored papers 6
Xavier Estivill
Sidra Medical Center
Co-authored papers 6
Roderic Guig??
Barcelona Institute of Science and Technology
Co-authored papers 6
Christoph Bock
CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences
Co-authored papers 6
Arcadi Navarro
Barcelonabeta Brain Research Center (BBRC), Pasqual Maragall Foundation
Co-authored papers 6
Dirk Eick
Helmholtz Center Munich and Center for Integrated Protein Science Munich (CIPSM)
Co-authored papers 6
Marc Dabad
Universitat de Barcelona (UB)
Co-authored papers 6
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