Skip to Main Content

Author Details

Rafael A Irizarry
Dana-Farber Cancer Institute
2001
176
77
PMIDPaper TitleJournal TitlePublished Year
37943166Effects of KRAS Genetic Interactions on Outcomes in Cancers of the Lung, Pancreas, and Colorectum.Cancer Epidemiol Biomarkers Prev2024
37943166Effects of KRAS Genetic Interactions on Outcomes in Cancers of the Lung, Pancreas, and Colorectum.Cancer Epidemiol Biomarkers Prev2024
35277956Reassessing pharmacogenomic cell sensitivity with multilevel statistical models.Biostatistics2023
37478846UBR5 forms ligand-dependent complexes on chromatin to regulate nuclear hormone receptor stability.Mol Cell2023
36574667Discovery of antibodies and cognate surface targets for ovarian cancer by surface profiling.Proc Natl Acad Sci U S A2023
37429993Significance analysis for clustering with single-cell RNA-sequencing data.Nat Methods2023
35277956Reassessing pharmacogenomic cell sensitivity with multilevel statistical models.Biostatistics2023
37478846UBR5 forms ligand-dependent complexes on chromatin to regulate nuclear hormone receptor stability.Mol Cell2023
37429993Significance analysis for clustering with single-cell RNA-sequencing data.Nat Methods2023
36574667Discovery of antibodies and cognate surface targets for ovarian cancer by surface profiling.Proc Natl Acad Sci U S A2023
34467372Capturing discrete latent structures: choose LDs over PCs.Biostatistics2022
35770795A probabilistic gene expression barcode for annotation of cell types from single-cell RNA-seq data.Biostatistics2022
35698050mirTarRnaSeq: An R/Bioconductor Statistical Package for miRNA-mRNA Target Identification and Interaction Analysis.BMC Genomics2022
35383642A Flexible Statistical Framework for Estimating Excess Mortality.Epidemiology2022
36050488Cell type-specific inference of differential expression in spatial transcriptomics.Nat Methods2022
35915508Differential richness inference for 16S rRNA marker gene surveys.Genome Biol2022
36962751All-cause excess mortality across 90 municipalities in Gujarat, India, during the COVID-19 pandemic (March 2020-April 2021).PLOS Glob Public Health2022
33603203Robust decomposition of cell type mixtures in spatial transcriptomics.Nat Biotechnol2022
34467372Capturing discrete latent structures: choose LDs over PCs.Biostatistics2022
35383642A Flexible Statistical Framework for Estimating Excess Mortality.Epidemiology2022
35770795A probabilistic gene expression barcode for annotation of cell types from single-cell RNA-seq data.Biostatistics2022
35698050mirTarRnaSeq: An R/Bioconductor Statistical Package for miRNA-mRNA Target Identification and Interaction Analysis.BMC Genomics2022
36962751All-cause excess mortality across 90 municipalities in Gujarat, India, during the COVID-19 pandemic (March 2020-April 2021).PLOS Glob Public Health2022
36050488Cell type-specific inference of differential expression in spatial transcriptomics.Nat Methods2022
35915508Differential richness inference for 16S rRNA marker gene surveys.Genome Biol2022
33603203Robust decomposition of cell type mixtures in spatial transcriptomics.Nat Biotechnol2022
34011491Excess deaths associated with covid-19 pandemic in 2020: age and sex disaggregated time series analysis in 29 high income countries.BMJ2021
34011491Excess deaths associated with covid-19 pandemic in 2020: age and sex disaggregated time series analysis in 29 high income countries.BMJ2021
33711273Progressive immune dysfunction with advancing disease stage in renal cell carcinoma.Cancer Cell2021
34508087Vaginal microbiome topic modeling of laboring Ugandan women with and without fever.NPJ Biofilms Microbiomes2021
34661103Characterizing batch effects and binding site-specific variability in ChIP-seq data.NAR Genom Bioinform2021
34875227Stem-like intestinal Th17 cells give rise to pathogenic effector T cells during autoimmunity.Cell2021
33711273Progressive immune dysfunction with advancing disease stage in renal cell carcinoma.Cancer Cell2021
34875227Stem-like intestinal Th17 cells give rise to pathogenic effector T cells during autoimmunity.Cell2021
34661103Characterizing batch effects and binding site-specific variability in ChIP-seq data.NAR Genom Bioinform2021
34508087Vaginal microbiome topic modeling of laboring Ugandan women with and without fever.NPJ Biofilms Microbiomes2021
32841603Large-Scale Topological Changes Restrain Malignant Progression in Colorectal Cancer.Cell2020
32915654Every Body Counts: Measuring Mortality From the COVID-19 Pandemic.Ann Intern Med2020
33293417Quantifying the dynamics of migration after Hurricane Maria in Puerto Rico.Proc Natl Acad Sci U S A2020
32620142Quantile normalization of single-cell RNA-seq read counts without unique molecular identifiers.Genome Biol2020
32841603Large-Scale Topological Changes Restrain Malignant Progression in Colorectal Cancer.Cell2020
33293417Quantifying the dynamics of migration after Hurricane Maria in Puerto Rico.Proc Natl Acad Sci U S A2020
32915654Every Body Counts: Measuring Mortality From the COVID-19 Pandemic.Ann Intern Med2020
32620142Quantile normalization of single-cell RNA-seq read counts without unique molecular identifiers.Genome Biol2020
29481604Detection and accurate false discovery rate control of differentially methylated regions from whole genome bisulfite sequencing.Biostatistics2019
36312875Selection-Corrected Statistical Inference for Region Detection With High-Throughput Assays.J Am Stat Assoc2019
31783894methylCC: technology-independent estimation of cell type composition using differentially methylated regions.Genome Biol2019
31870412Feature selection and dimension reduction for single-cell RNA-Seq based on a multinomial model.Genome Biol2019
29481604Detection and accurate false discovery rate control of differentially methylated regions from whole genome bisulfite sequencing.Biostatistics2019
30923056A gene expression atlas of embryonic neurogenesis in <i>Drosophila</i> reveals complex spatiotemporal regulation of lncRNAs.Development2019
  • 1 - 50 of 352

Recommended Authors

Travers Ching
Adaptive Biotechnologies
Career Start Year 2014
Number of shared co-authors 2
Charity W Law
The Walter and Eliza Hall Institute of Medical Research
Career Start Year 2011
Number of shared co-authors 6
Hans-Ulrich Klein
Columbia University Irving Medical Center
Career Start Year 2009
Number of shared co-authors 3
Oliver Stegle
Wellcome Sanger Institute
Career Start Year 2008
Number of shared co-authors 12
Mark J Dunning
The Medical School, The University of Sheffield
Career Start Year 2007
Number of shared co-authors 5
Joshua W K Ho
The University of Hong Kong
Career Start Year 2006
Number of shared co-authors 5
Altuna Akalin
Berlin Institute for Medical Systems Biology
Career Start Year 2006
Number of shared co-authors 5
Jessica C Mar
Australian Institute for Bioengineering and Nanotechnology, University of Queensland
Career Start Year 2005
Number of shared co-authors 6
Maria Chikina
University of Pittsburgh
Career Start Year 2005
Number of shared co-authors 3
Chol-Hee Jung
University of Melbourne
Career Start Year 2005
Number of shared co-authors 2
John C Marioni
Cancer Research UK Cambridge Institute, University of Cambridge
Career Start Year 2004
Number of shared co-authors 16
Andy G Lynch
University of St Andrews
Career Start Year 2004
Number of shared co-authors 11
Terence P Speed
Walter and Eliza Hall Institute of Medical Research
Career Start Year 2003
Number of shared co-authors 4
Gerald Quon
University of California davis
Career Start Year 2003
Number of shared co-authors 4
Zhandong Liu
Jan and Dan Duncan Neurological Research Institute at Texas Children's Hospital
Career Start Year 2003
Number of shared co-authors 1
Mark Reimers
Institute for Quantitative Health Science and Engineering, Michigan State University
Career Start Year 2002
Number of shared co-authors 3
Zhaohui S Qin
Emory University
Career Start Year 2002
Number of shared co-authors 6
George C Tseng
University of Pittsburgh School of Public Health
Career Start Year 2001
Number of shared co-authors 1
Mark A van de Wiel
Amsterdam University Medical Centers (Amsterdam UMC)
Career Start Year 2001
Number of shared co-authors 4
Mikhail G Dozmorov
Virginia Commonwealth University
Career Start Year 2001
Number of shared co-authors 3
Peter J Park
Harvard Medical School
Career Start Year 2001
Number of shared co-authors 26
Stefan Bekiranov
University of Virginia
Career Start Year 2000
Number of shared co-authors 2
Shawn Levy
HudsonAlpha Institute for Biotechnology
Career Start Year 1999
Number of shared co-authors 17
Elisabetta Manduchi
Center for Spatial and Functional Genomics, Children's Hospital of Philadelphia
Career Start Year 1999
Number of shared co-authors 7
Shannon K McWeeney
Oregon Health & Science University, University of California Berkeley
Career Start Year 1997
Number of shared co-authors 23
Mark D Robinson
University of Zurich
Career Start Year 1997
Number of shared co-authors 9
Wing Hung Wong
Stanford University
Career Start Year 1991
Number of shared co-authors 5
Jean-Pierre A Kocher
Mayo Clinic
Career Start Year 1991
Number of shared co-authors 2
Jian-Bing Fan
Nanfang Hospital and Basic Medical College, Southern Medical University
Career Start Year 1987
Number of shared co-authors 12
Yuval Kluger
Yale University School of Medicine
Career Start Year 1984
Number of shared co-authors 2

Collaborators

H??ctor Corrada Bravo
University of Maryland College Park, College Park
Co-authored papers 14
Benilton S Carvalho
Brazilian Institute of Neuroscience and Neurotechnology (BRAINN)
Co-authored papers 14
Matthew N McCall
Co-authored papers 11
Kasper D Hansen
Johns Hopkins University School of Medicine
Co-authored papers 10
Jef D Boeke
Institute for Systems Genetics, NYU School of Medicine
Co-authored papers 9
Andrew E Jaffe
Co-authored papers 8
Forrest A Spencer
Johns Hopkins University School of Medicine
Co-authored papers 8
Terence P Speed
Co-authored papers 8
Michael I Love
University of North Carolina at Chapel Hill
Co-authored papers 8
Leslie Cope
Johns Hopkins University School of Medicine
Co-authored papers 8
John Quackenbush
Harvard T. H. Chan School of Public Health
Co-authored papers 8
Jeffrey T Leek
Co-authored papers 7
Christine Ladd-Acosta
Co-authored papers 6
Stephanie C Hicks
Johns Hopkins Bloomberg School of Public Health
Co-authored papers 6
Francisco Martinez Murillo
Co-authored papers 4
Srinivasan Yegnasubramanian
Johns Hopkins University School of Medicine
Co-authored papers 4
Matthew E Ritchie
The University of Melbourne
Co-authored papers 4
Margaret Daniele Fallin
Co-authored papers 4
Wolfgang Huber
Technische Universitat Munchen
Co-authored papers 4
Robert Gentleman
Center for Computational Biomedicine, Harvard Medical School
Co-authored papers 3
Michael C Haffner
Fred Hutchinson Cancer Center
Co-authored papers 3
Sarah J Wheelan
National Human Genome Research Institute, National Institutes of Health
Co-authored papers 3
Margaret A Taub
Co-authored papers 3
Sheng Li
Co-authored papers 3
Xintao Wei
Co-authored papers 3
Alexander Dobin
Co-authored papers 3
Ming Shi
Co-authored papers 3
Ingo Ruczinski
Co-authored papers 3
Uwe Scherf
Co-authored papers 3
Carrie A Davis
Stanford University
Co-authored papers 3
Release 1.2