Author details

Full Name

Gemma L Holliday

Affiliation

European Bioinformatics Institute (EMBL-EBI)

ORCID

Career Start Year

2005

Papers

H Index

Expertise

CM4AI Collaborator

Andrej Sali (CM4AI)

PMID	Paper Title	Journal Title	Published Year
32449511	A strategy for large-scale comparison of evolutionary- and reaction-based classifications of enzyme function.	Database (Oxford)	2020
31796628	A global analysis of function and conservation of catalytic residues in enzymes.	J Biol Chem	2020
32449511	A strategy for large-scale comparison of evolutionary- and reaction-based classifications of enzyme function.	Database (Oxford)	2020
31796628	A global analysis of function and conservation of catalytic residues in enzymes.	J Biol Chem	2020
29106569	Mechanism and Catalytic Site Atlas (M-CSA): a database of enzyme reaction mechanisms and active sites.	Nucleic Acids Res	2018
30097089	Atlas of the Radical SAM Superfamily: Divergent Evolution of Function Using a "Plug and Play" Domain.	Methods Enzymol	2018
29184004	A global view of structure-function relationships in the tautomerase superfamily.	J Biol Chem	2018
29106569	Mechanism and Catalytic Site Atlas (M-CSA): a database of enzyme reaction mechanisms and active sites.	Nucleic Acids Res	2018
30097089	Atlas of the Radical SAM Superfamily: Divergent Evolution of Function Using a "Plug and Play" Domain.	Methods Enzymol	2018
29184004	A global view of structure-function relationships in the tautomerase superfamily.	J Biol Chem	2018
27812939	Evaluating Functional Annotations of Enzymes Using the Gene Ontology.	Methods Mol Biol	2017
28605775	Biocuration in the structure-function linkage database: the anatomy of a superfamily.	Database (Oxford)	2017
28365730	Biocuration in the structure-function linkage database: the anatomy of a superfamily.	Database (Oxford)	2017
27899635	InterPro in 2017-beyond protein family and domain annotations.	Nucleic Acids Res	2017
27812939	Evaluating Functional Annotations of Enzymes Using the Gene Ontology.	Methods Mol Biol	2017
28365730	Biocuration in the structure-function linkage database: the anatomy of a superfamily.	Database (Oxford)	2017
28605775	Biocuration in the structure-function linkage database: the anatomy of a superfamily.	Database (Oxford)	2017
27899635	InterPro in 2017-beyond protein family and domain annotations.	Nucleic Acids Res	2017
27153692	Reaction Decoder Tool (RDT): extracting features from chemical reactions.	Bioinformatics	2016
27153692	Reaction Decoder Tool (RDT): extracting features from chemical reactions.	Bioinformatics	2016
25820941	Key challenges for the creation and maintenance of specialist protein resources.	Proteins	2015
25820941	Key challenges for the creation and maintenance of specialist protein resources.	Proteins	2015
25654171	[FeFe]-hydrogenase maturation: insights into the role HydE plays in dithiomethylamine biosynthesis.	Biochemistry	2015
25957950	The Confidence Information Ontology: a step towards a standard for asserting confidence in annotations.	Database (Oxford)	2015
26284514	Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat.	Database (Oxford)	2015
26284514	Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat.	Database (Oxford)	2015
25957950	The Confidence Information Ontology: a step towards a standard for asserting confidence in annotations.	Database (Oxford)	2015
25654171	[FeFe]-hydrogenase maturation: insights into the role HydE plays in dithiomethylamine biosynthesis.	Biochemistry	2015
24412978	EC-BLAST: a tool to automatically search and compare enzyme reactions.	Nat Methods	2014
25299649	Predicting the functions and specificity of triterpenoid synthases: a mechanism-based multi-intermediate docking approach.	PLoS Comput Biol	2014
24412978	EC-BLAST: a tool to automatically search and compare enzyme reactions.	Nat Methods	2014
24271399	The Structure-Function Linkage Database.	Nucleic Acids Res	2014
24319146	The Catalytic Site Atlas 2.0: cataloging catalytic sites and residues identified in enzymes.	Nucleic Acids Res	2014
24657765	Exploring the biological and chemical complexity of the ligases.	J Mol Biol	2014
25299649	Predicting the functions and specificity of triterpenoid synthases: a mechanism-based multi-intermediate docking approach.	PLoS Comput Biol	2014
24657765	Exploring the biological and chemical complexity of the ligases.	J Mol Biol	2014
24271399	The Structure-Function Linkage Database.	Nucleic Acids Res	2014
24319146	The Catalytic Site Atlas 2.0: cataloging catalytic sites and residues identified in enzymes.	Nucleic Acids Res	2014
23175605	The EBI enzyme portal.	Nucleic Acids Res	2013
23175605	The EBI enzyme portal.	Nucleic Acids Res	2013
22006843	FunTree: a resource for exploring the functional evolution of structurally defined enzyme superfamilies.	Nucleic Acids Res	2012
22396634	Exploring the evolution of novel enzyme functions within structurally defined protein superfamilies.	PLoS Comput Biol	2012
22006843	FunTree: a resource for exploring the functional evolution of structurally defined enzyme superfamilies.	Nucleic Acids Res	2012
22058127	MACiE: exploring the diversity of biochemical reactions.	Nucleic Acids Res	2012
22396634	Exploring the evolution of novel enzyme functions within structurally defined protein superfamilies.	PLoS Comput Biol	2012
22058127	MACiE: exploring the diversity of biochemical reactions.	Nucleic Acids Res	2012
21605342	Characterizing the complexity of enzymes on the basis of their mechanisms and structures with a bio-computational analysis.	FEBS J	2011
21605342	Characterizing the complexity of enzymes on the basis of their mechanisms and structures with a bio-computational analysis.	FEBS J	2011
20679331	The CoFactor database: organic cofactors in enzyme catalysis.	Bioinformatics	2010
20850456	The structures and physicochemical properties of organic cofactors in biocatalysis.	J Mol Biol	2010

1 - 50 of 74

Nawar Al-Obaidi

Cardiovascular Research Unit, Newark Beth Israel Medical Center

Career Start Year 2013

Number of shared co-authors 6

Sayoni Das

University College London

Career Start Year 2012

Number of shared co-authors 12

Neil Swainston

Institute of Systems, University of Liverpool

Career Start Year 2006

Number of shared co-authors 4

Lian Duan

Brown University

Career Start Year 2006

Number of shared co-authors 3

Chakrapani Kalyanaraman

Department of Pharmaceutical Chemistry, University of California san francisco

Career Start Year 2002

Number of shared co-authors 6

Elena Evdokimova

University of Toronto

Career Start Year 2002

Number of shared co-authors 0

Margaret E Glasner

Texas A&M University, College Station

Career Start Year 2000

Number of shared co-authors 5

Jeffrey B Bonanno

Albert Einstein College of Medicine

Career Start Year 1999

Number of shared co-authors 5

Elisabeth Coudert

Centre Medical Universitaire

Career Start Year 1999

Number of shared co-authors 22

Stephen A McMahon

University of St Andrews

Career Start Year 1998

Number of shared co-authors 1

Hsiu-Ju Chiu

Joint Center for Structural Genomics

Career Start Year 1997

Number of shared co-authors 3

Florencio Pazos

National Centre for Biotechnology (CNB-CSIC)

Career Start Year 1997

Number of shared co-authors 1

Alexei Savchenko

University of Toronto

Career Start Year 1997

Number of shared co-authors 2

Iddo Friedberg

Iowa State University

Career Start Year 1997

Number of shared co-authors 21

Lukasz Jaroszewski

University of California Riverside School of Medicine

Career Start Year 1995

Number of shared co-authors 5

Matthew W Vetting

Albert Einstein College of Medicine

Career Start Year 1994

Number of shared co-authors 8

Youngchang Kim

Argonne National Laboratory

Career Start Year 1993

Number of shared co-authors 1

Val??rie de Cr??cy-Lagard

University of Florida

Career Start Year 1990

Number of shared co-authors 11

P??r Nordlund

Karolinska Institutet, BioClinicum J6

Career Start Year 1989

Number of shared co-authors 1

Karen N Allen

Boston University

Career Start Year 1989

Number of shared co-authors 6

Wladek Minor

University of Virginia

Career Start Year 1989

Number of shared co-authors 8

Anne Morgat

Centre Medical Universitaire

Career Start Year 1989

Number of shared co-authors 19

Mitchell D Miller

Rice University

Career Start Year 1989

Number of shared co-authors 3

Adam Godzik

University of California Riverside

Career Start Year 1987

Number of shared co-authors 9

Liisa Holm

Institute of Biotechnology, University of Helsinki

Career Start Year 1986

Number of shared co-authors 15

Peter D Karp

Pangea Systems Inc., USA and Marine Biological Laboratory

Career Start Year 1981

Number of shared co-authors 15

Andrei L Osterman

Sanford Burnham Prebys Medical Discovery Institute

Career Start Year 1980

Number of shared co-authors 9

Debra Dunaway-Mariano

University of New Mexico

Career Start Year 1978

Number of shared co-authors 6

Frank M Raushel

Texas A&M University, College Station

Career Start Year 1973

Number of shared co-authors 7

John A Gerlt

University of Illinois at Urbana-Champaign

Career Start Year 1973

Number of shared co-authors 16

row(s) 1 - 30 of 30

Patricia C Babbitt

University of California san francisco

Co-authored papers 12

Eyal Akiva

University of California san francisco

Co-authored papers 7

Shoshana D Brown

University of California san francisco

Co-authored papers 5

Elaine C Meng

Department of Pharmaceutical Chemistry, University of California San Francisco

Co-authored papers 4

Neil D Rawlings

Co-authored papers 3

Conrad C Huang

Department of Pharmaceutical Chemistry, University of California San Francisco

Co-authored papers 3

Christine Orengo

University College London, Institute of Structural and Molecular Biology

Co-authored papers 3

Thomas E Ferrin

Department of Pharmaceutical Chemistry, University of California San Francisco

Co-authored papers 3

Robert D Finn

European Bioinformatics Institute

Co-authored papers 3

Alex Bateman

European Bioinformatics Institute (EMBL-EBI)

Co-authored papers 3

John H Morris

University of California san francisco

Co-authored papers 3

Ian Sillitoe

University College London

Co-authored papers 3

Claire O'Donovan

European Bioinformatics Institute

Co-authored papers 3

Kim D Pruitt

National Center for Biotechnology Information, National Institutes of Health

Co-authored papers 2

Rodrigo Lopez

Co-authored papers 2

Ramanathan Sowdhamini

Indian Institute of Science

Co-authored papers 2

Gerard Manning

Genentech Inc.

Co-authored papers 2

Amos Bairoch

University of Geneva

Co-authored papers 2

Julius O B Jacobsen

William Harvey Research Institute, Queen Mary University of London

Co-authored papers 2

Christoph Steinbeck

Institute for Inorganic and Analytical Chemistry, Friedrich Schiller University Jena

Co-authored papers 2

Milton H Saier

University of California at San Diego

Co-authored papers 2

William R Pearson

University of Virginia

Co-authored papers 2

Marc Robinson-Rechavi

University of Lausanne

Co-authored papers 1

Marco Necci

Co-authored papers 1

C. Dale Poulter

University of Utah

Co-authored papers 1

Cathy H Wu

Georgetown University Medical Center

Co-authored papers 1

Teresa K Attwood

Co-authored papers 1

Young Mi Park

Co-authored papers 1

Paula de Matos

European Bioinformatics Institute

Co-authored papers 1

Hongzhan Huang

Co-authored papers 1

1 - 30

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