Author details

Full Name

Alberto Pascual-Montano

Affiliation

National Center for Biotechnology-CSIC

ORCID

Career Start Year

2001

Papers

H Index

Expertise

CM4AI Collaborator

Emma Lundberg (CM4AI)

PMID	Paper Title	Journal Title	Published Year
35327392	Functional Enrichment Analysis of Regulatory Elements.	Biomedicines	2022
36358609	Molecular Classification of Colorectal Cancer by microRNA Profiling: Correlation with the Consensus Molecular Subtypes (CMS) and Validation of miR-30b Targets.	Cancers (Basel)	2022
29520809	Genome-wide signatures of flowering adaptation to climate temperature: Regional analyses in a highly diverse native range of Arabidopsis thaliana.	Plant Cell Environ	2018
27958775	Distinct Molecular Signature of Murine Fetal Liver and Adult Hematopoietic Stem Cells Identify Novel Regulators of Hematopoietic Stem Cell Function.	Stem Cells Dev	2017
28542306	Gene signature associated with benign neurofibroma transformation to malignant peripheral nerve sheath tumors.	PLoS One	2017
28615644	miRNA profiling during antigen-dependent T cell activation: A role for miR-132-3p.	Sci Rep	2017
26838552	Notch-regulated miR-223 targets the aryl hydrocarbon receptor pathway and increases cytokine production in macrophages from rheumatoid arthritis patients.	Sci Rep	2016
25752506	A subpopulation of CD103(pos) ICOS(pos) Treg cells occurs at high frequency in lymphopenic mice and represents a lymph node specific differentiation stage.	Eur J Immunol	2015
26599326	Highly proliferative primitive fetal liver hematopoietic stem cells are fueled by oxidative metabolic pathways.	Stem Cell Res	2015
26076068	Quest for Missing Proteins: Update 2015 on Chromosome-Centric Human Proteome Project.	J Proteome Res	2015
26144527	Proteogenomics Dashboard for the Human Proteome Project.	J Proteome Res	2015
25887585	NMF-mGPU: non-negative matrix factorization on multi-GPU systems.	BMC Bioinformatics	2015
25940629	NFFinder: an online bioinformatics tool for searching similar transcriptomics experiments in the context of drug repositioning.	Nucleic Acids Res	2015
24138474	Surfing transcriptomic landscapes. A step beyond the annotation of chromosome 16 proteome.	J Proteome Res	2014
25559987	Improving miRNA-mRNA interaction predictions.	BMC Genomics	2014
24850757	miR-217 is an oncogene that enhances the germinal center reaction.	Blood	2014
24270791	CentrosomeDB: a new generation of the centrosomal proteins database for Human and Drosophila melanogaster.	Nucleic Acids Res	2014
23759584	Chromothripsis: breakage-fusion-bridge over and over again.	Cell Cycle	2013
24356509	Sumoylated hnRNPA2B1 controls the sorting of miRNAs into exosomes through binding to specific motifs.	Nat Commun	2013
24108462	Unraveling a novel transcription factor code determining the human arterial-specific endothelial cell signature.	Blood	2013
23671335	3DEM Loupe: Analysis of macromolecular dynamics using structures from electron microscopy.	Nucleic Acids Res	2013
22348024	Quantification of miRNA-mRNA interactions.	PLoS One	2012
22972926	MicroRNAs control the maintenance of thymic epithelia and their competence for T lineage commitment and thymocyte selection.	J Immunol	2012
22573175	GeneCodis3: a non-redundant and modular enrichment analysis tool for functional genomics.	Nucleic Acids Res	2012
21949701	Functional analysis beyond enrichment: non-redundant reciprocal linkage of genes and biological terms.	PLoS One	2011
22166494	Assessment of NER solutions against the first and second CALBC Silver Standard Corpus.	J Biomed Semantics	2011
22177292	U-Compare bio-event meta-service: compatible BioNLP event extraction services.	BMC Bioinformatics	2011
20346105	Moara: a Java library for extracting and normalizing gene and protein mentions.	BMC Bioinformatics	2010
20513648	MARQ: an online tool to mine GEO for experiments with similar or opposite gene expression signatures.	Nucleic Acids Res	2010
20478823	Babelomics: an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling.	Nucleic Acids Res	2010
18971254	CentrosomeDB: a human centrosomal proteins database.	Nucleic Acids Res	2009
19743419	Proteopathogen, a protein database for studying Candida albicans--host interaction.	Proteomics	2009
19465387	GeneCodis: interpreting gene lists through enrichment analysis and integration of diverse biological information.	Nucleic Acids Res	2009
19458159	SENT: semantic features in text.	Nucleic Acids Res	2009
19220918	Comparison of molecular dynamics and superfamily spaces of protein domain deformation.	BMC Struct Biol	2009
18339638	ChIPCodis: mining complex regulatory systems in yeast by concurrent enrichment analysis of chip-on-chip data.	Bioinformatics	2008
18937846	Assessment of protein set coherence using functional annotations.	BMC Bioinformatics	2008
18515346	bioNMF: a web-based tool for nonnegative matrix factorization in biology.	Nucleic Acids Res	2008
18312629	SPACE: an algorithm to predict and quantify alternatively spliced isoforms using microarrays.	Genome Biol	2008
17204154	GENECODIS: a web-based tool for finding significant concurrent annotations in gene lists.	Genome Biol	2007
17768239	The cyclic AMP receptor protein modulates quorum sensing, motility and multiple genes that affect intestinal colonization in Vibrio cholerae.	Microbiology (Reading)	2007
16379000	Host response to the attenuated poxvirus vector NYVAC: upregulation of apoptotic genes and NF-kappaB-responsive genes in infected HeLa cells.	J Virol	2006
16875499	bioNMF: a versatile tool for non-negative matrix factorization in biology.	BMC Bioinformatics	2006
16872502	A literature-based similarity metric for biological processes.	BMC Bioinformatics	2006
16438716	Discovering semantic features in the literature: a foundation for building functional associations.	BMC Bioinformatics	2006
16503973	Biclustering of gene expression data by Non-smooth Non-negative Matrix Factorization.	BMC Bioinformatics	2006
16464256	Integrated analysis of gene expression by Association Rules Discovery.	BMC Bioinformatics	2006
16526426	Nonsmooth nonnegative matrix factorization (nsNMF).	IEEE Trans Pattern Anal Mach Intell	2006
15140980	Microarray analysis reveals characteristic changes of host cell gene expression in response to attenuated modified vaccinia virus Ankara infection of human HeLa cells.	J Virol	2004
15477099	XMIPP: a new generation of an open-source image processing package for electron microscopy.	J Struct Biol	2004

1 - 50 of 55

Alfredo Benso

Italy Consorzio Interuniversitario Nazionale per l'Informatica

Career Start Year 2011

Number of shared co-authors 4

Alessandro Savino

Consorzio Interuniversitario Nazionale per l'Informatica

Career Start Year 2011

Number of shared co-authors 3

Gergely Csaba

Ludwig-Maximilians-Universitat Munchen

Career Start Year 2007

Number of shared co-authors 0

Jan Baumbach

University of Hamburg

Career Start Year 2006

Number of shared co-authors 1

Alberto Paccanaro

University of London

Career Start Year 2005

Number of shared co-authors 5

Mario Cannataro

Data Analytics Research Center, University Magna Graecia of Catanzaro

Career Start Year 2004

Number of shared co-authors 1

Wenjin Jim Zheng

University of Texas Health Science Center at Houston

Career Start Year 2004

Number of shared co-authors 0

Johan Rung

Uppsala University

Career Start Year 2001

Number of shared co-authors 0

Gary D Bader

University of Toronto

Career Start Year 2000

Number of shared co-authors 3

Vladimir B Bajic

King Abdullah University of Science and Technology (KAUST)

Career Start Year 2000

Number of shared co-authors 0

Marcio Luis Acencio

Norwegian University of Science and Technology

Career Start Year 2000

Number of shared co-authors 2

Carlos Prieto

Hospital Rey Juan Carlos

Career Start Year 2000

Number of shared co-authors 1

Hedi Peterson

Institute of Computer Science, University of Tartu

Career Start Year 2000

Number of shared co-authors 0

Petri T??r??nen

Institute of Biotechnology, University of Helsinki

Career Start Year 1999

Number of shared co-authors 5

Lars Juhl Jensen

Novo Nordisk Foundation Center for Protein Research, University of Copenhagen

Career Start Year 1998

Number of shared co-authors 3

Igor Jurisica

Schroeder Arthritis Institute

Career Start Year 1998

Number of shared co-authors 1

Blaz Zupan

University of Ljubljana

Career Start Year 1998

Number of shared co-authors 1

Ralf Herwig

Max Planck Institute for Molecular Genetics

Career Start Year 1998

Number of shared co-authors 1

Benno Schwikowski

Center for Bioinformatics, Institut Pasteur CNRS

Career Start Year 1997

Number of shared co-authors 0

Alvis Brazma

European Bioinformatics Institute

Career Start Year 1996

Number of shared co-authors 2

Jaak Vilo

Institute of Computer Science, University of Tartu

Career Start Year 1996

Number of shared co-authors 0

Ralf Zimmer

Ludwig-Maximilians-Universitat Munchen

Career Start Year 1995

Number of shared co-authors 0

Ron Shamir

Tel Aviv University

Career Start Year 1995

Number of shared co-authors 0

Ioannis Xenarios

University of Lausanne

Career Start Year 1994

Number of shared co-authors 6

Finn Drabl??s

NTNU - Norwegian University of Science and Technology

Career Start Year 1994

Number of shared co-authors 0

Miguel A Andrade-Navarro

Institute of Organismic and Molecular Evolution, Johannes Gutenberg University

Career Start Year 1991

Number of shared co-authors 3

Michael F Ochs

The College of New Jersey

Career Start Year 1988

Number of shared co-authors 0

Alfonso Valencia

Josep Carreras Leukaemia Research Institute (IJC)

Career Start Year 1986

Number of shared co-authors 18

Luciano Milanesi

Institute of Biomedical Technologies - National Research Council of Italy

Career Start Year 1982

Number of shared co-authors 2

Yves Moreau

KU Leuven - University of Leuven

Career Start Year 1967

Number of shared co-authors 3

row(s) 1 - 30 of 30

Jose Maria Carazo

National Centre for Biotechnology (CNB CSIC), Campus Universidad Autonoma de Madrid

Co-authored papers 21

Miguel Vazquez

Norwegian University of Science and Technology

Co-authored papers 6

Victor Segura

Center for Applied Medical Research (CIMA)

Co-authored papers 5

Fernando J Corrales

National Center for Biotechnology

Co-authored papers 3

Juan Pablo Albar

National Center for Biotechnology

Co-authored papers 3

Susana Guerra

Co-authored papers 3

Mariana Neves

Co-authored papers 3

Udo Hahn

Friedrich Schiller University Jena

Co-authored papers 2

Jos?? Ignacio Casal

Max-Planck-Institut fur Entwicklungsbiologie

Co-authored papers 2

Manuel Fuentes

Cancer Research Centre (IBMCC/CSIC/USAL/IBSAL)

Co-authored papers 2

Paula D??ez

Cancer Research Centre (IBMCC/CSIC/USAL/IBSAL)

Co-authored papers 2

Javier A Vel??zquez-Muriel

University of California san francisco

Co-authored papers 2

Manuel Rueda

The Barcelona Institute of Science and Technology

Co-authored papers 1

Carol L Nilsson

Lund University

Co-authored papers 1

Gilberto B Domont

Institute of Chemistry, Federal University of Rio de Janeiro

Co-authored papers 1

Gy??rgy Marko-Varga

Clinical Protein Science & Imaging, Biomedical Centre, Lund University

Co-authored papers 1

Sophia Ananiadou

Co-authored papers 1

Ana Conesa

Institute for Integrative Systems Biology, Spanish National Research Council (CSIC)

Co-authored papers 1

Lawrence E Hunter

University of Colorado School of Medicine

Co-authored papers 1

Mark S Baker

Macquarie University

Co-authored papers 1

Ignacio Medina

Co-authored papers 1

Jan A Kors

Erasmus MC - University Medical Center Rotterdam

Co-authored papers 1

Yu-Ju Chen

Institute of Chemistry

Co-authored papers 1

Seul-Ki Jeong

Seul-Ki Jeong Neurology Clinic

Co-authored papers 1

Dietrich Rebholz-Schuhmann

University of Cologne

Co-authored papers 1

Juan Antonio Vizca??no

EMBL-European Bioinformatics Institute (EMBL-EBI)

Co-authored papers 1

Sjors H W Scheres

Medical Research Council Laboratory of Molecular Biology

Co-authored papers 1

Mar??a Gonz??lez-Gonz??lez

Cancer Research Centre (IBMCC/CSIC/USAL/IBSAL)

Co-authored papers 1

Roger A Kroes

Falk Center for Molecular Therapeutics, Northwestern University

Co-authored papers 1

Hagit Shatkay

University of Delaware

Co-authored papers 1

1 - 30

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