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Author Details

Sameer Velankar
European Bioinformatics Institute
1997
96
41
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37933859AlphaFold Protein Structure Database in 2024: providing structure coverage for over 214 million protein sequences.Nucleic Acids Res2024
37933859AlphaFold Protein Structure Database in 2024: providing structure coverage for over 214 million protein sequences.Nucleic Acids Res2024
38015445EMBL's European Bioinformatics Institute (EMBL-EBI) in 2023.Nucleic Acids Res2024
38015445EMBL's European Bioinformatics Institute (EMBL-EBI) in 2023.Nucleic Acids Res2024
36382391The impact of AlphaFold Protein Structure Database on the fields of life sciences.Proteomics2023
36382391The impact of AlphaFold Protein Structure Database on the fields of life sciences.Proteomics2023
38042830PDBe CCDUtils: an RDKit-based toolkit for handling and analysing small molecules in the Protein Data Bank.J Cheminform2023
38040737Annotating Macromolecular Complexes in the Protein Data Bank: Improving the FAIRness of Structure Data.Sci Data2023
37850517Challenges in bridging the gap between protein structure prediction and functional interpretation.Proteins2023
37905971Impact of AlphaFold on structure prediction of protein complexes: The CASP15-CAPRI experiment.Proteins2023
38085238PDBImages: a command-line tool for automated macromolecular structure visualization.Bioinformatics2023
37561405Announcing the launch of Protein Data Bank China as an Associate Member of the Worldwide Protein Data Bank Partnership.Acta Crystallogr D Struct Biol2023
36828268ModelCIF: An Extension of PDBx/mmCIF Data Representation for Computed Structure Models.J Mol Biol2023
37259835The CCP4 suite: integrative software for macromolecular crystallography.Acta Crystallogr D Struct Biol2023
36755055AlphaFold2 reveals commonalities and novelties in protein structure space for 21 model organisms.Commun Biol2023
36807079The opportunities and challenges posed by the new generation of deep learning-based protein structure predictors.Curr Opin Struct Biol2023
36477213EMBL's European Bioinformatics Institute (EMBL-EBI) in 2022.Nucleic Acids Res2023
37045837Unified access to up-to-date residue-level annotations from UniProtKB and other biological databases for PDB data.Sci Data2023
38085238PDBImages: a command-line tool for automated macromolecular structure visualization.Bioinformatics2023
37561405Announcing the launch of Protein Data Bank China as an Associate Member of the Worldwide Protein Data Bank Partnership.Acta Crystallogr D Struct Biol2023
37905971Impact of AlphaFold on structure prediction of protein complexes: The CASP15-CAPRI experiment.Proteins2023
37850517Challenges in bridging the gap between protein structure prediction and functional interpretation.Proteins2023
38042830PDBe CCDUtils: an RDKit-based toolkit for handling and analysing small molecules in the Protein Data Bank.J Cheminform2023
38040737Annotating Macromolecular Complexes in the Protein Data Bank: Improving the FAIRness of Structure Data.Sci Data2023
37045837Unified access to up-to-date residue-level annotations from UniProtKB and other biological databases for PDB data.Sci Data2023
37259835The CCP4 suite: integrative software for macromolecular crystallography.Acta Crystallogr D Struct Biol2023
36477213EMBL's European Bioinformatics Institute (EMBL-EBI) in 2022.Nucleic Acids Res2023
36807079The opportunities and challenges posed by the new generation of deep learning-based protein structure predictors.Curr Opin Struct Biol2023
36828268ModelCIF: An Extension of PDBx/mmCIF Data Representation for Computed Structure Models.J Mol Biol2023
36755055AlphaFold2 reveals commonalities and novelties in protein structure space for 21 model organisms.Commun Biol2023
34791371AlphaFold Protein Structure Database: massively expanding the structural coverage of protein-sequence space with high-accuracy models.Nucleic Acids Res2022
35844485Whither structural biologists?IUCrJ2022
35460671PDBx/mmCIF Ecosystem: Foundational Semantic Tools for Structural Biology.J Mol Biol2022
36173162PDBe and PDBe-KB: Providing high-quality, up-to-date and integrated resources of macromolecular structures to support basic and applied research and education.Protein Sci2022
35641150Characterizing and explaining the impact of disease-associated mutations in proteins without known structures or structural homologs.Brief Bioinform2022
364488473D-Beacons: decreasing the gap between protein sequences and structures through a federated network of protein structure data resources.Gigascience2022
34791371AlphaFold Protein Structure Database: massively expanding the structural coverage of protein-sequence space with high-accuracy models.Nucleic Acids Res2022
35844485Whither structural biologists?IUCrJ2022
35641150Characterizing and explaining the impact of disease-associated mutations in proteins without known structures or structural homologs.Brief Bioinform2022
35460671PDBx/mmCIF Ecosystem: Foundational Semantic Tools for Structural Biology.J Mol Biol2022
364488473D-Beacons: decreasing the gap between protein sequences and structures through a federated network of protein structure data resources.Gigascience2022
36173162PDBe and PDBe-KB: Providing high-quality, up-to-date and integrated resources of macromolecular structures to support basic and applied research and education.Protein Sci2022
33348379The impact of structural bioinformatics tools and resources on SARS-CoV-2 research and therapeutic strategies.Brief Bioinform2021
34081107PDBe aggregated API: programmatic access to an integrative knowledge graph of molecular structure data.Bioinformatics2021
34293799Highly accurate protein structure prediction for the human proteome.Nature2021
33956157Mol* Viewer: modern web app for 3D visualization and analysis of large biomolecular structures.Nucleic Acids Res2021
33950382The Protein Data Bank Archive.Methods Mol Biol2021
33657417Enhanced validation of small-molecule ligands and carbohydrates in the Protein Data Bank.Structure2021
33978738Modernized uniform representation of carbohydrate molecules in the Protein Data Bank.Glycobiology2021
34301175PDBeCIF: an open-source mmCIF/CIF parsing and processing package.BMC Bioinformatics2021
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Collaborators

Gerard J Kleywegt
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 33
Stephen K Burley
The State University of New Jersey
Co-authored papers 20
Mihaly Varadi
European Bioinformatics Institute
Co-authored papers 18
Aleksandras Gutmanas
European Bioinformatics Institute
Co-authored papers 17
Helen M Berman
The State University of New Jersey
Co-authored papers 15
John D Westbrook
The State University of New Jersey
Co-authored papers 15
Jose M Dana
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 13
John L Markley
University of Wisconsin-Madison
Co-authored papers 13
Swanand Gore
Co-authored papers 11
Ardan Patwardhan
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 11
Shoshana J Wodak
VIB-VUB Center for Structural Biology
Co-authored papers 10
Zukang Feng
The State University of New Jersey
Co-authored papers 10
Genji Kurisu
Institute for Protein Research, Osaka University
Co-authored papers 10
Ganesh J Swaminathan
European Bioinformatics Institute (EMBL-EBI)
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Christine Orengo
University College London, Institute of Structural and Molecular Biology
Co-authored papers 10
Jasmine Young
The State University of New Jersey
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Haruki Nakamura
Institute for Protein Research, Osaka University
Co-authored papers 10
Kim Henrick
The State University of New Jersey
Co-authored papers 9
Nurul Nadzirin
Co-authored papers 9
Alexandre M J J Bonvin
Bijvoet Center for Biomolecular Research, Utrecht University
Co-authored papers 8
Catherine L Lawson
Institute for Quantitative Biomedicine, State University of New Jersey
Co-authored papers 8
Ian Sillitoe
University College London
Co-authored papers 7
Ezra Peisach
The State University of New Jersey
Co-authored papers 7
Eldon L Ulrich
University of Wisconsin-Madison
Co-authored papers 7
Chenghua Shao
The State University of New Jersey
Co-authored papers 7
Jeffrey C Hoch
University of Connecticut Health Center
Co-authored papers 6
Paul D Adams
Lawrence Berkeley National Laboratory
Co-authored papers 6
Marc F Lensink
University Lille, CNRS
Co-authored papers 6
Torsten Schwede
University of Basel
Co-authored papers 5
Andrej Sali (CM4AI)
University of California San Francisco
Co-authored papers 5
Release 1.2