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Author Details

David S Roos
University of Pennsylvania
1979
215
81
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37953350VEuPathDB: the eukaryotic pathogen, vector and host bioinformatics resource center in 2023.Nucleic Acids Res2024
36656904TriTrypDB: An integrated functional genomics resource for kinetoplastida.PLoS Negl Trop Dis2023
34718728VEuPathDB: the eukaryotic pathogen, vector and host bioinformatics resource center.Nucleic Acids Res2022
35552456The Quest for Orthologs orthology benchmark service in 2022.Nucleic Acids Res2022
34864248VectorBase.org updates: bioinformatic resources for invertebrate vectors of human pathogens and related organisms.Curr Opin Insect Sci2022
31961916The Toxoplasma gondii virulence factor ROP16 acts in cis and trans, and suppresses T cell responses.J Exp Med2020
31758445ToxoDB: Functional Genomics Resource for Toxoplasma and Related Organisms.Methods Mol Biol2020
29106667MicrobiomeDB: a systems biology platform for integrating, mining and analyzing microbiome experiments.Nucleic Acids Res2018
30152809FungiDB: An Integrated Bioinformatic Resource for Fungi and Oomycetes.J Fungi (Basel)2018
30176233Glycolysis is important for optimal asexual growth and formation of mature tissue cysts by Toxoplasma gondii.Int J Parasitol2018
30377279Aspartyl Protease 5 Matures Dense Granule Proteins That Reside at the Host-Parasite Interface in Toxoplasma gondii.mBio2018
30345257CSGID Solves Structures and Identifies Phenotypes for Five Enzymes in <i>Toxoplasma gondii</i>.Front Cell Infect Microbiol2018
29761457EuPathDB: The Eukaryotic Pathogen Genomics Database Resource.Methods Mol Biol2018
27903906EuPathDB: the eukaryotic pathogen genomics database resource.Nucleic Acids Res2017
26694607A Lipolytic Lecithin:Cholesterol Acyltransferase Secreted by Toxoplasma Facilitates Parasite Replication and Egress.J Biol Chem2016
27663739O-fucosylated glycoproteins form assemblies in close proximity to the nuclear pore complexes of Toxoplasma gondii.Proc Natl Acad Sci U S A2016
26738725Local admixture of amplified and diversified secreted pathogenesis determinants shapes mosaic Toxoplasma gondii genomes.Nat Commun2016
25036052Genomic profiling of human Leishmania braziliensis lesions identifies transcriptional modules associated with cutaneous immunopathology.J Invest Dermatol2015
26259940Population Genetics, Evolutionary Genomics, and Genome-Wide Studies of Malaria: A View Across the International Centers of Excellence for Malaria Research.Am J Trop Med Hyg2015
26175406Chromerid genomes reveal the evolutionary path from photosynthetic algae to obligate intracellular parasites.Elife2015
26196739The Orphan Nuclear Receptor TLX Is an Enhancer of STAT1-Mediated Transcription and Immunity to Toxoplasma gondii.PLoS Biol2015
25867681A large-scale proteogenomics study of apicomplexan pathogens-Toxoplasma gondii and Neospora caninum.Proteomics2015
25278220A review of the global burden, novel diagnostics, therapeutics, and vaccine targets for cryptosporidium.Lancet Infect Dis2015
25388105The Eukaryotic Pathogen Databases: a functional genomic resource integrating data from human and veterinary parasites.Methods Mol Biol2015
24505488Differential induction of TLR3-dependent innate immune signaling by closely related parasite species.PLoS One2014
25404324Evolutionary cell biology: two origins, one objective.Proc Natl Acad Sci U S A2014
24837104Bystander chronic infection negatively impacts development of CD8(+) T cell memory.Immunity2014
24928899Dynamics of the Toxoplasma gondii inner membrane complex.J Cell Sci2014
24936976Standardized metadata for human pathogen/vector genomic sequences.PLoS One2014
22924926Toxoplasma gondii seroprevalence in Mali.J Parasitol2013
23874205Cytotoxic T cells mediate pathology and metastasis in cutaneous leishmaniasis.PLoS Pathog2013
23932202Cryptic organelle homology in apicomplexan parasites: insights from evolutionary cell biology.Curr Opin Microbiol2013
23460516Replication and distribution of Toxoplasma gondii in the small intestine after oral infection with tissue cysts.Infect Immun2013
23175615EuPathDB: the eukaryotic pathogen database.Nucleic Acids Res2013
23161692SchistoDB: an updated genome resource for the three key schistosomes of humans.Nucleic Acids Res2013
22202120Targeted disruption of Toxoplasma gondii serine protease inhibitor 1 increases bradyzoite cyst formation in vitro and parasite tissue burden in mice.Infect Immun2012
22981537The cytokines interleukin 27 and interferon-γ promote distinct Treg cell populations required to limit infection-induced pathology.Immunity2012
22457617Comparative genomics of the apicomplexan parasites Toxoplasma gondii and Neospora caninum: Coccidia differing in host range and transmission strategy.PLoS Pathog2012
22332236Toward community standards in the quest for orthologs.Bioinformatics2012
22064857FungiDB: an integrated functional genomics database for fungi.Nucleic Acids Res2012
22116064TDR Targets: a chemogenomics resource for neglected diseases.Nucleic Acids Res2012
22116062GeneDB--an annotation database for pathogens.Nucleic Acids Res2012
20974635AmoebaDB and MicrosporidiaDB: functional genomic resources for Amoebozoa and Microsporidia species.Nucleic Acids Res2011
22216142Identification of surprisingly diverse type IV pili, across a broad range of gram-positive bacteria.PLoS One2011
22068979A monomorphic haplotype of chromosome Ia is associated with widespread success in clonal and nonclonal populations of Toxoplasma gondii.mBio2011
22004680Comparative genomics of the pathogenic ciliate Ichthyophthirius multifiliis, its free-living relatives and a host species provide insights into adoption of a parasitic lifestyle and prospects for disease control.Genome Biol2011
21829561Subcellular antigen location influences T-cell activation during acute infection with Toxoplasma gondii.PLoS One2011
21889509The search for the missing link: a relic plastid in Perkinsus?Int J Parasitol2011
21901743Using OrthoMCL to assign proteins to OrthoMCL-DB groups or to cluster proteomes into new ortholog groups.Curr Protoc Bioinformatics2011
21573242Fosmidomycin uptake into Plasmodium and Babesia-infected erythrocytes is facilitated by parasite-induced new permeability pathways.PLoS One2011
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Collaborators

University of Georgia
Co-authored papers 32
Perelman School of Medicine, University of Pennsylvania
Co-authored papers 24
University of Pennsylvania
Co-authored papers 23
University of Pennsylvania
Co-authored papers 14
CSIR - National Chemical Laboratory
Co-authored papers 13
Wellcome Sanger Institute
Co-authored papers 12
University of Pennsylvania
Co-authored papers 12
University of Pennsylvania
Co-authored papers 11
Julius-Maximilians-Universitat Wurzburg
Co-authored papers 11
Perelman School of Medicine, University of Pennsylvania Philadelphia
Co-authored papers 9
The University of Melbourne
Co-authored papers 8
Center for Bioinformatics, University of Pennsylvania
Co-authored papers 8
HemoShear Therapeutics LLC
Co-authored papers 8
Institute of Integrative Biology, University of Liverpool
Co-authored papers 7
Bayer Healthcare Pharmaceuticals
Co-authored papers 7
Bio21 Molecular Science and Biotechnology Institute, University of Melbourne
Co-authored papers 6
University of Nebraska at Omaha
Co-authored papers 6
Macquarie University
Co-authored papers 5
University Hospitals Bristol and Weston NHS Foundation Trust
Co-authored papers 5
Co-authored papers 5
Center for Emerging and Re-emerging Infectious Diseases, University of Washington
Co-authored papers 5
University of Guelph
Co-authored papers 4
King Abdullah University of Science and Technology
Co-authored papers 4
University of Pennsylvania Perelman School of Medicine
Co-authored papers 4
Everett Community College
Co-authored papers 4
Institute for Genome Sciences, University of Maryland School of Medicine
Co-authored papers 4
AGORA Cancer Research Center
Co-authored papers 3
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Center for Genomics and Systems Biology
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University of Pennsylvania Perelman School of Medicine
Co-authored papers 3