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Author Details

Marina Lizio
Cerevance Ltd
2009
36
21
PMIDPaper TitleJournal TitlePublished Year
36375694Characterisation of C101248: A novel selective THIK-1 channel inhibitor for the modulation of microglial NLRP3-inflammasome.Neuropharmacology2023
37759202Defining super-enhancers by highly ranked histone H4 multi-acetylation levels identifies transcription factors associated with glioblastoma stem-like properties.BMC Genomics2023
33211864FANTOM enters 20th year: expansion of transcriptomic atlases and functional annotation of non-coding RNAs.Nucleic Acids Res2021
32718981Comparative transcriptomics of primary cells in vertebrates.Genome Res2020
30407557Update of the FANTOM web resource: expansion to provide additional transcriptome atlases.Nucleic Acids Res2019
29494619Shared activity patterns arising at genetic susceptibility loci reveal underlying genomic and cellular architecture of human disease.PLoS Comput Biol2018
30080437JQ1 affects BRD2-dependent and independent transcription regulation without disrupting H4-hyperacetylated chromatin states.Epigenetics2018
30538238Author Correction: Transcription start site profiling of 15 anatomical regions of the Macaca mulatta central nervous system.Sci Data2018
27794045Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals.Nucleic Acids Res2017
28241135An atlas of human long non-coding RNAs with accurate 5' ends.Nature2017
29087374Transcription start site profiling of 15 anatomical regions of the Macaca mulatta central nervous system.Sci Data2017
29182598Monitoring transcription initiation activities in rat and dog.Sci Data2017
28972578Linking FANTOM5 CAGE peaks to annotations with CAGEscan.Sci Data2017
28809016Application of a CAGE Method to an Avian Development Study.Methods Mol Biol2017
28698358Integrative CAGE and DNA Methylation Profiling Identify Epigenetically Regulated Genes in NSCLC.Mol Cancer Res2017
28829439An integrated expression atlas of miRNAs and their promoters in human and mouse.Nat Biotechnol2017
28850106FANTOM5 CAGE profiles of human and mouse samples.Sci Data2017
28850105FANTOM5 CAGE profiles of human and mouse reprocessed for GRCh38 and GRCm38 genome assemblies.Sci Data2017
28873399Systematic analysis of transcription start sites in avian development.PLoS Biol2017
26862012Corrigendum: A draft network of ligand-receptor-mediated multicellular signalling in human.Nat Commun2016
27645561Transcriptome analysis of periodontitis-associated fibroblasts by CAGE sequencing identified DLX5 and RUNX2 long variant as novel regulators involved in periodontitis.Sci Rep2016
27199372DeepCAGE transcriptomics identify HOXD10 as a transcription factor regulating lymphatic endothelial responses to VEGF-C.J Cell Sci2016
27402679FANTOM5 transcriptome catalog of cellular states based on Semantic MediaWiki.Database (Oxford)2016
25723102Gateways to the FANTOM5 promoter level mammalian expression atlas.Genome Biol2015
26635867Mapping Mammalian Cell-type-specific Transcriptional Regulatory Networks Using KD-CAGE and ChIP-seq Data in the TC-YIK Cell Line.Front Genet2015
26549461DeepCAGE Transcriptomics Reveal an Important Role of the Transcription Factor MAFB in the Lymphatic Endothelium.Cell Rep2015
25678556Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells.Science2015
24727769Interactive visualization and analysis of large-scale sequencing datasets using ZENBU.Nat Biotechnol2014
25049417PAPD5-mediated 3' adenylation and subsequent degradation of miR-21 is disrupted in proliferative disease.Proc Natl Acad Sci U S A2014
24670764A promoter-level mammalian expression atlas.Nature2014
24676093Comparison of CAGE and RNA-seq transcriptome profiling using clonally amplified and single-molecule next-generation sequencing.Genome Res2014
22303458Automated workflow for preparation of cDNA for cap analysis of gene expression on a single molecule sequencer.PLoS One2012
21075797Update of the FANTOM web resource: from mammalian transcriptional landscape to its dynamic regulation.Nucleic Acids Res2011
20964636Reduction of non-insert sequence reads by dimer eliminator LNA oligonucleotide for small RNA deep sequencing.Biotechniques2010
19374775The FANTOM web resource: from mammalian transcriptional landscape to its dynamic regulation.Genome Biol2009
19377474The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line.Nat Genet2009
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Collaborators

Hideya Kawaji
RIKEN Center for Integrative Medical Sciences
Co-authored papers 31
Piero Carninci
RIKEN Center for Integrative Medical Sciences
Co-authored papers 30
Yoshihide Hayashizaki
Center for Integrative Medical Sciences
Co-authored papers 29
Alistair R R Forrest
RIKEN Center for Integrative Medical Sciences
Co-authored papers 27
Timo Lassmann
Telethon Kids Institute, University of Western Australia
Co-authored papers 20
Jessica Severin
Center for Integrative Medical Sciences
Co-authored papers 19
Masayoshi Itoh
RIKEN Center for Integrative Medical Sciences
Co-authored papers 19
Takeya Kasukawa
RIKEN Center for Integrative Medical Sciences
Co-authored papers 17
Carsten O Daub
International Institute of Molecular and Cell Biology in Warsaw
Co-authored papers 15
Imad Abugessaisa
RIKEN Center for Integrative Medical Sciences
Co-authored papers 15
Jayson Harshbarger
RIKEN Center for Integrative Medical Sciences
Co-authored papers 15
Akira Hasegawa
RIKEN Center for Integrative Medical Sciences
Co-authored papers 14
Harukazu Suzuki
RIKEN Center for Integrative Medical Sciences
Co-authored papers 11
Dave S B Hoon
Saint John's Cancer Institute at Saint John's Health Center
Co-authored papers 10
Erik Arner
RIKEN Center for Integrative Medical Sciences (IMS)
Co-authored papers 10
Jay W Shin
Genome Institute of Singapore (GIS)
Co-authored papers 8
Nicolas Bertin
University Bordeaux, CNRS
Co-authored papers 8
Peter Heutink
German Center for Neurodegenerative Diseases (DZNE).
Co-authored papers 7
Mizuho Sakai
University of California berkeley
Co-authored papers 7
Chung-Chau Hon
RIKEN center for Integrative Medical Sciences, Hiroshima University
Co-authored papers 7
Michael Rehli
University Hospital Regensburg
Co-authored papers 7
Shohei Noma
Center for Integrative Medical Sciences
Co-authored papers 7
Christine A Wells
The University of Melbourne
Co-authored papers 7
Albin Sandelin
University of Copenhagen
Co-authored papers 7
Yuri Ishizu
RIKEN Center for Life Science Technologies
Co-authored papers 7
Michael Detmar
Institute of Pharmaceutical Sciences, ETH Zurich
Co-authored papers 6
Jordan A Ramilowski
Advanced Medical Research Center, Yokohama City University
Co-authored papers 6
Atsushi Kondo
Tokyo University of Agriculture and Technology
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David A Hume
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