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Author Details

James T Robinson
University of California San Diego
2007
25
20
Trey Ideker (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36562559igv.js: an embeddable JavaScript implementation of the Integrative Genomics Viewer (IGV).Bioinformatics2023
37945900Circular extrachromosomal DNA promotes tumor heterogeneity in high-risk medulloblastoma.Nat Genet2023
37323575Targeted <i>in silico</i> characterization of fusion transcripts in tumor and normal tissues via FusionInspector.Cell Rep Methods2023
370855393D genome mapping identifies subgroup-specific chromosome conformations and tumor-dependency genes in ependymoma.Nat Commun2023
29428417Juicebox.js Provides a Cloud-Based Visualization System for Hi-C Data.Cell Syst2018
29092934Variant Review with the Integrative Genomics Viewer.Cancer Res2017
28263302Whole genome sequencing resource identifies 18 new candidate genes for autism spectrum disorder.Nat Neurosci2017
28985562Cohesin Loss Eliminates All Loop Domains.Cell2017
26780094Integrative genomic analysis by interoperation of bioinformatics tools in GenomeSpace.Nat Methods2016
27467250Juicebox Provides a Visualization System for Hi-C Contact Maps with Unlimited Zoom.Cell Syst2016
27180905RNA Duplex Map in Living Cells Reveals Higher-Order Transcriptome Structure.Cell2016
25723152A genomic data viewer for iPad.Genome Biol2015
25617416Quantitative visualization of alternative exon expression from RNA-seq data.Bioinformatics2015
24390350Discovery and saturation analysis of cancer genes across 21 tumour types.Nature2014
25497547A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping.Cell2014
22517427Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration.Brief Bioinform2013
24104757The anatomy of successful computational biology software.Nat Biotechnol2013
24260313Compression of structured high-throughput sequencing data.PLoS One2013
23396133Mutations causing medullary cystic kidney disease type 1 lie in a large VNTR in MUC1 missed by massively parallel sequencing.Nat Genet2013
22940246A high-throughput chromatin immunoprecipitation approach reveals principles of dynamic gene regulation in mammals.Mol Cell2012
21221095Integrative genomics viewer.Nat Biotechnol2011
21993624A high-resolution map of human evolutionary constraint using 29 mammals.Nature2011
20436462Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs.Nat Biotechnol2010
20179022Integrative analysis of the melanoma transcriptome.Genome Res2010
17982442Characterizing the cancer genome in lung adenocarcinoma.Nature2007
  • 1 - 25 of 25

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Collaborators

Jill P Mesirov
University of California San Diego
Co-authored papers 13
Eric S Lander
Vanderbilt-Ingram Cancer Center, Vanderbilt University
Co-authored papers 10
Helga Thorvaldsd??ttir
Broad Institute of MIT and Harvard
Co-authored papers 8
Chad Nusbaum
Co-authored papers 5
Aviv Regev
Broad Institute of MIT and Harvard
Co-authored papers 5
Erez Lieberman Aiden
Co-authored papers 4
Andreas Gnirke
The Center for Genome Architecture, Baylor College of Medicine
Co-authored papers 4
Gad Getz
Broad Institute of the Massachusetts Institute of Technology and Harvard
Co-authored papers 4
Stacey Gabriel
Broad Institute of MIT and Harvard
Co-authored papers 4
Matthew Meyerson
Broad Institute
Co-authored papers 3
David B Jaffe
Co-authored papers 3
Wendy Winckler
Co-authored papers 3
Carrie Sougnez
The Broad Institute of Harvard and MIT
Co-authored papers 3
Neva C Durand
Co-authored papers 3
Levi A Garraway
Broad Institute of Harvard and MIT
Co-authored papers 3
Manuel Garber
Co-authored papers 3
Anton Nekrutenko
The Pennsylvania State University, University Park
Co-authored papers 2
Barry Demchak
University of California
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Michael C Zody
Broad Institute of Harvard and MIT
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Suhas S P Rao
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George M Weinstock
The Genome Center at Washington University, Washington University School of Medicine
Co-authored papers 2
Bradley E Bernstein
Broad Institute of MIT and Harvard
Co-authored papers 2
Howard Y Chang
Center for Personal Dynamic Regulomes, Stanford University
Co-authored papers 2
Jeremy N Rich
UPMC Hillman Cancer Center, University of Pittsburgh Medical Center
Co-authored papers 2
Muhammad S Shamim
Co-authored papers 2
Roel G W Verhaak
Yale School of Medicine
Co-authored papers 2
Kristian Cibulskis
Co-authored papers 2
Robert J Wechsler-Reya
Sanford Burnham Prebys Medical Discovery Institute
Co-authored papers 2
Hannah Carter
University of California San Diego
Co-authored papers 2
Bang Wong
Co-authored papers 2
Release 1.2