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Author Details

Jonathan C Trinidad
Indiana University
2000
76
32
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36902150Osteocyte-Derived CaMKK2 Regulates Osteoclasts and Bone Mass in a Sex-Dependent Manner through Secreted Calpastatin.Int J Mol Sci2023
37555458An identification method to distinguish monomeric sugar isomers on glycopeptides.Analyst2023
35240051Identification of 14-3-3 proteins, Polo kinase, and RNA-binding protein Pes4 as key regulators of meiotic commitment in budding yeast.Curr Biol2022
35647863Effect of Ligands and Transducers on the Neurotensin Receptor 1 Conformational Ensemble.J Am Chem Soc2022
35699514Analysis of Keratinocytic Exosomes from Diabetic and Nondiabetic Mice by Charge Detection Mass Spectrometry.Anal Chem2022
36442121Metal retention and replacement in QueD2 protect queuosine-tRNA biosynthesis in metal-starved Acinetobacter baumannii.Proc Natl Acad Sci U S A2022
36458192The phycoerythrobilin isomerization activity of MpeV in <i>Synechococcus</i> sp. WH8020 is prevented by the presence of a histidine at position 141 within its phycoerythrin-I β-subunit substrate.Front Microbiol2022
36100021Sex-specific endocrine regulation of seasonal aggression in Siberian hamsters.Proc Biol Sci2022
36009332Metabolic and Structural Insights into Hydrogen Sulfide Mis-Regulation in <i>Enterococcus faecalis</i>.Antioxidants (Basel)2022
35042867Deciphering the mechanism of processive ssDNA digestion by the Dna2-RPA ensemble.Nat Commun2022
34101419Thermal Analysis of a Mixture of Ribosomal Proteins by vT-ESI-MS: Toward a Parallel Approach for Characterizing the <i>Stabilitome</i>.Anal Chem2021
33718843Impaired phosphatidylethanolamine metabolism activates a reversible stress response that detects and resolves mutant mitochondrial precursors.iScience2021
33627406Molecular bases of an alternative dual-enzyme system for light color acclimation of marine <i>Synechococcus</i> cyanobacteria.Proc Natl Acad Sci U S A2021
33615607Melatonin-dependent changes in neurosteroids are associated with increased aggression in a seasonally breeding rodent.J Neuroendocrinol2021
33753485Assembly of a dsRNA synthesizing complex: RNA-DEPENDENT RNA POLYMERASE 2 contacts the largest subunit of NUCLEAR RNA POLYMERASE IV.Proc Natl Acad Sci U S A2021
34666004The BORDER family of negative transcription elongation factors regulates flowering time in Arabidopsis.Curr Biol2021
32985870Glycoproteomic Analysis of Human Urinary Exosomes.Anal Chem2020
31989813Charge Detection Mass Spectrometry Measurements of Exosomes and other Extracellular Particles Enriched from Bovine Milk.Anal Chem2020
31953495Comparative Proteomics Reveal Me31B's Interactome Dynamics, Expression Regulation, and Assembly Mechanism into Germ Granules during Drosophila Germline Development.Sci Rep2020
32576676The Response of <i>Acinetobacter baumannii</i> to Hydrogen Sulfide Reveals Two Independent Persulfide-Sensing Systems and a Connection to Biofilm Regulation.mBio2020
30784584An Acinetobacter baumannii, Zinc-Regulated Peptidase Maintains Cell Wall Integrity during Immune-Mediated Nutrient Sequestration.Cell Rep2019
31548257AvrRpm1 Functions as an ADP-Ribosyl Transferase to Modify NOI-domain Containing Proteins, Including Arabidopsis and Soybean RPM1-interacting Protein 4.Plant Cell2019
30986033Dissecting the Components of Sindbis Virus from Arthropod and Vertebrate Hosts: Implications for Infectivity Differences.ACS Infect Dis2019
30905682Multi-metal Restriction by Calprotectin Impacts De Novo Flavin Biosynthesis in Acinetobacter baumannii.Cell Chem Biol2019
29313205Distinguishing Sulfotyrosine Containing Peptides from their Phosphotyrosine Counterparts Using Mass Spectrometry.J Am Soc Mass Spectrom2018
30201783Multiple Flagellin Proteins Have Distinct and Synergistic Roles in Agrobacterium tumefaciens Motility.J Bacteriol2018
30906200Proteome changes in the aging <i>Drosophila melanogaster</i> head.Int J Mass Spectrom2018
30374335Thioredoxin Profiling of Multiple Thioredoxin-Like Proteins in <i>Staphylococcus aureus</i>.Front Microbiol2018
29712426Hydrogen Sulfide Sensing through Reactive Sulfur Species (RSS) and Nitroxyl (HNO) in Enterococcus faecalis.ACS Chem Biol2018
28070562Biological and Chemical Adaptation to Endogenous Hydrogen Peroxide Production in <i>Streptococcus pneumoniae</i> D39.mSphere2017
28462924Identification and characterization of a heterotrimeric archaeal DNA polymerase holoenzyme.Nat Commun2017
28196888Sulfide-responsive transcriptional repressor SqrR functions as a master regulator of sulfide-dependent photosynthesis.Proc Natl Acad Sci U S A2017
28960712A High-Throughput Mass-Spectrometry-Based Assay for Identifying the Biochemical Functions of Putative Glycosidases.Chembiochem2017
28945271An in vivo proteomic analysis of the Me31B interactome in Drosophila germ granules.FEBS Lett2017
28850209Hydrogen Sulfide and Reactive Sulfur Species Impact Proteome S-Sulfhydration and Global Virulence Regulation in Staphylococcus aureus.ACS Infect Dis2017
27852864Palmitoylation of Sindbis Virus TF Protein Regulates Its Plasma Membrane Localization and Subsequent Incorporation into Virions.J Virol2017
28076789Reduced Insulin/IGF-1 Signaling Restores the Dynamic Properties of Key Stress Granule Proteins during Aging.Cell Rep2017
27806570Staphylococcus aureus sqr Encodes a Type II Sulfide:Quinone Oxidoreductase and Impacts Reactive Sulfur Speciation in Cells.Biochemistry2016
27821767Archaeal orthologs of Cdc45 and GINS form a stable complex that stimulates the helicase activity of MCM.Proc Natl Acad Sci U S A2016
27845783Characterization of lectin binding affinities via direct LC-MS profiling: implications for glycopeptide enrichment and separation strategies.Analyst2016
27788242Disparate Regulatory Mechanisms Control Fat3 and P75NTR Protein Transport through a Conserved Kif5-Interaction Domain.PLoS One2016
25315458Populations of metal-glycan structures influence MS fragmentation patterns.J Am Soc Mass Spectrom2015
26192747Tau post-translational modifications in wild-type and human amyloid precursor protein transgenic mice.Nat Neurosci2015
25840811Glycopeptide Site Heterogeneity and Structural Diversity Determined by Combined Lectin Affinity Chromatography/IMS/CID/MS Techniques.J Am Soc Mass Spectrom2015
24995978Glucose regulates mitochondrial motility via Milton modification by O-GlcNAc transferase.Cell2014
23035237Activity-dependent protein dynamics define interconnected cores of co-regulated postsynaptic proteins.Mol Cell Proteomics2013
23816992N- and O-glycosylation in the murine synaptosome.Mol Cell Proteomics2013
23639431Nedd4 is a specific E3 ubiquitin ligase for the NMDA receptor subunit GluN2D.Neuropharmacology2013
23478938Inhibition of lysosomal enzyme activities by proton pump inhibitors.J Gastroenterol2013
23239825Differentiation of opioid drug effects by hierarchical multi-site phosphorylation.Mol Pharmacol2013
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Collaborators

Alma L Burlingame
Department of Pharmaceutical Chemistry, University of California san francisco
Co-authored papers 27
Ralf Schoepfer
Center for Molecular Biology
Co-authored papers 8
Agnes Thalhammer
University of Trieste
Co-authored papers 7
Martin F Jarrold
Indiana University
Co-authored papers 4
Robert J Chalkley
Department of Pharmaceutical Chemistry, University of California at San Francisco
Co-authored papers 4
James A Wells
Department of Pharmaceutical Chemistry, University of California San Francisco
Co-authored papers 3
Sami Mahrus
Department of Pharmaceutical Chemistry, University of California san francisco
Co-authored papers 3
Walter J Chazin
and Center for Structural Biology, Vanderbilt University
Co-authored papers 2
Ming Gao
Co-authored papers 2
Michelle Trester-Zedlitz
University of California San Francisco
Co-authored papers 2
David T Barkan
Novartis Institutes for BioMedical Research, Inc.
Co-authored papers 2
Kirk C Hansen
University of Colorado Anschutz Medical Campus
Co-authored papers 2
Milos V Novotny
Co-authored papers 2
Mark von Zastrow
University of California san francisco
Co-authored papers 2
Andrej Sali (CM4AI)
University of California San Francisco
Co-authored papers 2
William S Hancock
Northeastern University
Co-authored papers 1
Mathias Uhl??n
KTH Royal Institute of Technology
Co-authored papers 1
Dorothea Fiedler
Leibniz Forschungsinstitut fur Molekulare Pharmakologie (FMP)
Co-authored papers 1
Nevan J Krogan (CM4AI)
University of California San Francisco
Co-authored papers 1
Kiev R Blasier
University of Virginia
Co-authored papers 1
Lennart Mucke
Gladstone Institute of Neurological Disease, Gladstone Institutes
Co-authored papers 1
Luke E Berchowitz
Columbia University Irving Medical Center
Co-authored papers 1
Christopher D Deppmann
University of Virginia
Co-authored papers 1
Greg T Cantin
Amgen Inc.
Co-authored papers 1
Oliver Hofmann
University of Melbourne
Co-authored papers 1
Noah Ollikainen
California Institute of Technology
Co-authored papers 1
Erin D Jeffery
Agenus Inc, American Society for Mass Spectrometry, Hartwick College, Human Proteome Organisation, Large Scale Biology Corp, University of Virginia
Co-authored papers 1
Michael S VanNieuwenhze
Co-authored papers 1
Helene L Cardasis
Co-authored papers 1
Susumu Tomita
Co-authored papers 1
Release 1.2