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Author Details

Fabian J Theis
Technical University of Munich
1992
346
82
Emma Lundberg (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37735568Deep generative modeling of transcriptional dynamics for RNA velocity analysis in single cells.Nat Methods2024
37735568Deep generative modeling of transcriptional dynamics for RNA velocity analysis in single cells.Nat Methods2024
38086412Deep Learning-Based Retinal Layer Segmentation in Optical Coherence Tomography Scans of Patients with Inherited Retinal Diseases.Klin Monbl Augenheilkd2024
38049697Modeling fragment counts improves single-cell ATAC-seq analysis.Nat Methods2024
38086412Deep Learning-Based Retinal Layer Segmentation in Optical Coherence Tomography Scans of Patients with Inherited Retinal Diseases.Klin Monbl Augenheilkd2024
38049697Modeling fragment counts improves single-cell ATAC-seq analysis.Nat Methods2024
36302986Modeling intercellular communication in tissues using spatial graphs of cells.Nat Biotechnol2023
36302986Modeling intercellular communication in tissues using spatial graphs of cells.Nat Biotechnol2023
37602975Robust dimethyl-based multiplex-DIA doubles single-cell proteome depth via a reference channel.Mol Syst Biol2023
38039370Early life adversity shapes social subordination and cell type-specific transcriptomic patterning in the ventral hippocampus.Sci Adv2023
38036503Explainable machine learning for profiling the immunological synapse and functional characterization of therapeutic antibodies.Nat Commun2023
37670505Multi-omics regulatory network inference in the presence of missing data.Brief Bioinform2023
38014002Integrated multi-omics single cell atlas of the human retina.Res Sq2023
37996418A reversible state of hypometabolism in a human cellular model of sporadic Parkinson's disease.Nat Commun2023
37813989Population-level integration of single-cell datasets enables multi-scale analysis across samples.Nat Methods2023
37562402Distinct molecular profiles of skull bone marrow in health and neurological disorders.Cell2023
37873298Scaling cross-tissue single-cell annotation models.bioRxiv2023
37697055Delineating mouse β-cell identity during lifetime and in diabetes with a single cell atlas.Nat Metab2023
37348459What do you most hope spatial molecular profiling will help us understand? Part 1.Cell Syst2023
37154091Predicting cellular responses to complex perturbations in high-throughput screens.Mol Syst Biol2023
36959420Single-cell profiling to explore pancreatic cancer heterogeneity, plasticity and response to therapy.Nat Cancer2023
36889660Gene Expression-Based Molecular Test as Diagnostic Aid for the Differential Diagnosis of Psoriasis and Eczema in Formalin-Fixed and Paraffin-Embedded Tissue, Microbiopsies, and Tape Strips.J Invest Dermatol2023
37012447Epicardioid single-cell genomics uncovers principles of human epicardium biology in heart development and disease.Nat Biotechnol2023
37318792Single-cell biology: what does the future hold?Mol Syst Biol2023
37002403Best practices for single-cell analysis across modalities.Nat Rev Genet2023
37438332Tolerance of repeated toxic injuries of murine livers is associated with steatosis and inflammation.Cell Death Dis2023
37248388Learning consistent subcellular landmarks to quantify changes in multiplexed protein maps.Nat Methods2023
37119871The neglected twin: Nummular eczema is a variant of atopic dermatitis with codominant T<sub>H</sub>2/T<sub>H</sub>17 immune response.J Allergy Clin Immunol2023
36865282OME-Zarr: a cloud-optimized bioimaging file format with international community support.bioRxiv2023
37243592Systemic alterations in neutrophils and their precursors in early-stage chronic obstructive pulmonary disease.Cell Rep2023
36732632Biologically informed deep learning to query gene programs in single-cell atlases.Nat Cell Biol2023
37294170CIARA: a cluster-independent algorithm for identifying markers of rare cell types from single-cell sequencing data.Development2023
36921054Synthetic enforcement of STING signaling in cancer cells appropriates the immune microenvironment for checkpoint inhibitor therapy.Sci Adv2023
37520699Progressive disruption of hematopoietic architecture from clonal hematopoiesis to MDS.iScience2023
37502708Single-cell reference mapping to construct and extend cell-type hierarchies.NAR Genom Bioinform2023
37670505Multi-omics regulatory network inference in the presence of missing data.Brief Bioinform2023
37562402Distinct molecular profiles of skull bone marrow in health and neurological disorders.Cell2023
38014002Integrated multi-omics single cell atlas of the human retina.Res Sq2023
37520699Progressive disruption of hematopoietic architecture from clonal hematopoiesis to MDS.iScience2023
37996418A reversible state of hypometabolism in a human cellular model of sporadic Parkinson's disease.Nat Commun2023
37697055Delineating mouse β-cell identity during lifetime and in diabetes with a single cell atlas.Nat Metab2023
37502708Single-cell reference mapping to construct and extend cell-type hierarchies.NAR Genom Bioinform2023
38039370Early life adversity shapes social subordination and cell type-specific transcriptomic patterning in the ventral hippocampus.Sci Adv2023
37873298Scaling cross-tissue single-cell annotation models.bioRxiv2023
38036503Explainable machine learning for profiling the immunological synapse and functional characterization of therapeutic antibodies.Nat Commun2023
37813989Population-level integration of single-cell datasets enables multi-scale analysis across samples.Nat Methods2023
37602975Robust dimethyl-based multiplex-DIA doubles single-cell proteome depth via a reference channel.Mol Syst Biol2023
37318792Single-cell biology: what does the future hold?Mol Syst Biol2023
37154091Predicting cellular responses to complex perturbations in high-throughput screens.Mol Syst Biol2023
37119871The neglected twin: Nummular eczema is a variant of atopic dermatitis with codominant T<sub>H</sub>2/T<sub>H</sub>17 immune response.J Allergy Clin Immunol2023
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Collaborators

Christian Gieger
German Research Center for Cardiovascular Disease (DZHK)
Co-authored papers 18
Annette Peters
Ludwig-Maximilians-Universitat Munchen
Co-authored papers 16
Thomas Illig
Co-authored papers 12
Konstantin Strauch
German Research Center for Environmental Health, Institute of Genetic Epidemiology
Co-authored papers 11
Wolfgang Wurst
Institute of Developmental Genetics, German Research Center for Environmental Health
Co-authored papers 10
Matthias Heinig
Co-authored papers 9
Harald Grallert
Co-authored papers 9
H-Erich Wichmann
Co-authored papers 8
Oliver Stegle
Wellcome Sanger Institute
Co-authored papers 7
Sarah A Teichmann
Wellcome Sanger Institute
Co-authored papers 7
Nir Yosef
Center for Computational Biology, University of California berkeley
Co-authored papers 7
Martin Hrab?? de Angelis
German Center for Diabetes Research (DZD e.V.)
Co-authored papers 6
Berthold Göttgens
Co-authored papers 6
John C Marioni
Cancer Research UK Cambridge Institute, University of Cambridge
Co-authored papers 5
Matthias Mann
Max-Planck Institute of Biochemistry
Co-authored papers 5
Roland Eils
Berlin Institute of Health (BIH) and Charite
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Thomas Meitinger
Technical University of Munich, Institute of Human Genetics
Co-authored papers 5
Hans Clevers
Princess Maxima Center for Pediatric Oncology
Co-authored papers 4
Guido Reifenberger
Heinrich Heine University
Co-authored papers 4
Simone Wahl
Co-authored papers 4
Peter Lichter
German Cancer Research Center (DKFZ)
Co-authored papers 4
Janina S Ried
Co-authored papers 4
Dmitrij Frishman
Co-authored papers 4
Julio Saez-Rodriguez
Institute of Computational Biomedicine, Heidelberg University
Co-authored papers 4
Andreas-David Brunner
Max-Planck Institute of Biochemistry
Co-authored papers 4
Ido Amit
Weizmann Institute of Science
Co-authored papers 4
Giovanni Palla
Institute of Computational Biology
Co-authored papers 3
Wolfgang Rathmann
German Center for Diabetes Research
Co-authored papers 3
Norbert H??bner
Max Delbruck Center for Molecular Medicine in the Helmholtz Association (MDC)
Co-authored papers 3
Ozren Polasek
Co-authored papers 3
Release 1.2