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Author Details

Henning Hermjakob
European Bioinformatics Institute (EMBL-EBI)
1997
275
77
Trey Ideker (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37941124The Reactome Pathway Knowledgebase 2024.Nucleic Acids Res2024
37941124The Reactome Pathway Knowledgebase 2024.Nucleic Acids Res2024
36626722Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work.J Proteome Res2023
37819683The landscape of microRNA interaction annotation: analysis of three rare disorders as a case study.Database (Oxford)2023
37647632The effects of pathogenic and likely pathogenic variants for inherited hemostasis disorders in 140â¿¿214 UK Biobank participants.Blood2023
37904913Pathway-based, reaction-specific annotation of disease variants for elucidation of molecular phenotypes.bioRxiv2023
37986970ChatGPT usage in the Reactome curation process.bioRxiv2023
37467006Illuminate the Functions of Dark Proteins Using the Reactome-IDG Web Portal.Curr Protoc2023
37333417Illuminating Dark Proteins using Reactome Pathways.bioRxiv2023
36626722Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work.J Proteome Res2023
37183442Human Autoantigen Atlas: Searching for the Hallmarks of Autoantigens.J Proteome Res2023
37053306Using the Reactome Database.Curr Protoc2023
37904913Pathway-based, reaction-specific annotation of disease variants for elucidation of molecular phenotypes.bioRxiv2023
37986970ChatGPT usage in the Reactome curation process.bioRxiv2023
37647632The effects of pathogenic and likely pathogenic variants for inherited hemostasis disorders in 140â¿¿214 UK Biobank participants.Blood2023
37819683The landscape of microRNA interaction annotation: analysis of three rare disorders as a case study.Database (Oxford)2023
37053306Using the Reactome Database.Curr Protoc2023
37183442Human Autoantigen Atlas: Searching for the Hallmarks of Autoantigens.J Proteome Res2023
37467006Illuminate the Functions of Dark Proteins Using the Reactome-IDG Web Portal.Curr Protoc2023
37333417Illuminating Dark Proteins using Reactome Pathways.bioRxiv2023
34718729Complex Portal 2022: new curation frontiers.Nucleic Acids Res2022
35692045KNIME workflow for retrieving causal drug and protein interactions, building networks, and performing topological enrichment analysis demonstrated by a DILI case study.J Cheminform2022
35671510Addressing barriers in comprehensiveness, accessibility, reusability, interoperability and reproducibility of computational models in systems biology.Brief Bioinform2022
35534633Understudied proteins: opportunities and challenges for functional proteomics.Nat Methods2022
35534555An open invitation to the Understudied Proteins Initiative.Nat Biotechnol2022
36742342Systems Biology in ELIXIR: modelling in the spotlight.F1000Res2022
34788843The reactome pathway knowledgebase 2022.Nucleic Acids Res2022
34850134The European Bioinformatics Institute (EMBL-EBI) in 2021.Nucleic Acids Res2022
34718729Complex Portal 2022: new curation frontiers.Nucleic Acids Res2022
34761267The IntAct database: efficient access to fine-grained molecular interaction data.Nucleic Acids Res2022
34871441iProX in 2021: connecting proteomics data sharing with big data.Nucleic Acids Res2022
35671510Addressing barriers in comprehensiveness, accessibility, reusability, interoperability and reproducibility of computational models in systems biology.Brief Bioinform2022
35534633Understudied proteins: opportunities and challenges for functional proteomics.Nat Methods2022
35534555An open invitation to the Understudied Proteins Initiative.Nat Biotechnol2022
35692045KNIME workflow for retrieving causal drug and protein interactions, building networks, and performing topological enrichment analysis demonstrated by a DILI case study.J Cheminform2022
36742342Systems Biology in ELIXIR: modelling in the spotlight.F1000Res2022
34850134The European Bioinformatics Institute (EMBL-EBI) in 2021.Nucleic Acids Res2022
34871441iProX in 2021: connecting proteomics data sharing with big data.Nucleic Acids Res2022
34761267The IntAct database: efficient access to fine-grained molecular interaction data.Nucleic Acids Res2022
34788843The reactome pathway knowledgebase 2022.Nucleic Acids Res2022
32486891Using Reactome to build an autophagy mechanism knowledgebase.Autophagy2021
32486891Using Reactome to build an autophagy mechanism knowledgebase.Autophagy2021
33961020IntAct App: a Cytoscape application for molecular interaction network visualization and analysis.Bioinformatics2021
33677561Analysing the yeast complexome-the Complex Portal rising to the challenge.Nucleic Acids Res2021
33620773Reproducibility in systems biology modelling.Mol Syst Biol2021
33830216A decoupled, modular and scriptable architecture for tools to curate data platforms.Bioinformatics2021
33307250Deep learning embedder method and tool for mass spectra similarity search.J Proteomics2021
33031499Identifiers.org: Compact Identifier services in the cloud.Bioinformatics2021
32637990The Minimum Information about a Molecular Interaction CAusal STatement (MI2CAST).Bioinformatics2021
34664389COVID19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms.Mol Syst Biol2021
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Collaborators

EMBL's European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 79
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 58
EMBL-European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 54
Institute for Systems Biology
Co-authored papers 30
Co-authored papers 29
Institute of Systems, University of Liverpool
Co-authored papers 27
NYU Grossman School of Medicine
Co-authored papers 27
Co-authored papers 24
Ontario Institute for Cancer Research, University Avenue
Co-authored papers 23
EMBL's European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 23
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 23
University of California at Los Angeles
Co-authored papers 21
European Molecular Biology Laboratory- European Bioinformatics Institute
Co-authored papers 21
Co-authored papers 20
European Bioinformatics Institute
Co-authored papers 20
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 20
Co-authored papers 19
NYU Grossman School of Medicine
Co-authored papers 18
Ontario Institute for Cancer Research
Co-authored papers 18
Co-authored papers 18
Ecole polytechnique federale de Lausanne (EPFL)
Co-authored papers 17
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 17
Ontario Institute for Cancer Research
Co-authored papers 16
Oregon Health and Science University
Co-authored papers 16
Co-authored papers 15
Co-authored papers 15
University of Tor Vergata
Co-authored papers 15
University of Rome 'Tor Vergata'
Co-authored papers 14
Co-authored papers 14
Co-authored papers 13