Author details

Full Name

Karen E Ross

Affiliation

ORCID

Career Start Year

1996

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36799723	The Glycan Structure Dictionary-a dictionary describing commonly used glycan structure terms.		2023
37818330	KSFinder-a knowledge graph model for link prediction of novel phosphorylated substrates of kinases.		2023
37574851	The insertion sequence excision enhancer: A PrimPol-based primer invasion system for immobilizing transposon-transmitted antibiotic resistance genes.		2023
36996232	Network models of protein phosphorylation, acetylation, and ubiquitination connect metabolic and cell signaling pathways in lung cancer.		2023
36197453	Overview of the COVID-19 text mining tool interactive demonstration track in BioCreative VII.	Database (Oxford)	2022
35975455	A knowledge graph representation learning approach to predict novel kinase-substrate interactions.	Mol Omics	2022
35696082	iPTMnet RESTful API for Post-translational Modification Network Analysis.	Methods Mol Biol	2022
34613368	COVID-19 Knowledge Graph from semantic integration of biomedical literature and databases.	Bioinformatics	2021
33727228	Alterations in the Global Proteome and Phosphoproteome in Third Generation EGFR TKI Resistance Reveal Drug Targets to Circumvent Resistance.	Cancer Res	2021
33757578	The IS6 family, a clinically important group of insertion sequences including IS26.	Mobile DNA	2021
34517763	TnCentral: a Prokaryotic Transposable Element Database and Web Portal for Transposon Analysis.	mBio	2021
32603024	Understanding ER+ Breast Cancer Dormancy Using Bioinspired Synthetic Matrices for Long-Term 3D Culture and Insights into Late Recurrence.	Adv Biosyst	2020
32324859	GlyGen data model and processing workflow.	Bioinformatics	2020
32234815	Toxin-Antitoxin Gene Pairs Found in Tn Family Transposons Appear To Be an Integral Part of the Transposition Module.	mBio	2020
32395768	RESTful API for iPTMnet: a resource for protein post-translational modification network discovery.	Database (Oxford)	2020
31616925	GlyGen: Computational and Informatics Resources for Glycoscience.	Glycobiology	2020
33046717	Protein ontology on the semantic web for knowledge discovery.	Sci Data	2020
30736855	Coordination between TGF-Î² cellular signaling and epigenetic regulation during epithelial to mesenchymal transition.	Epigenetics Chromatin	2019
31069334	Tunable synthetic extracellular matrices to investigate breast cancer response to biophysical and biochemical cues.	APL Bioeng	2019
29145615	iPTMnet: an integrated resource for protein post-translational modification network discovery.	Nucleic Acids Res	2018
30576489	iTextMine: integrated text-mining system for large-scale knowledge extraction from the literature.	Database (Oxford)	2018
29860481	DEXTER: Disease-Expression Relation Extraction from Text.	Database (Oxford)	2018
29695735	Integrative annotation and knowledge discovery of kinase post-translational modifications and cancer-associated mutations through federated protein ontologies and resources.	Sci Rep	2018
28150233	Tutorial on Protein Ontology Resources.	Methods Mol Biol	2017
27899649	Protein Ontology (PRO): enhancing and scaling up the representation of protein entities.	Nucleic Acids Res	2017
28150246	iPTMnet: Integrative Bioinformatics for Studying PTM Networks.	Methods Mol Biol	2017
28150240	Analysis of Protein Phosphorylation and Its Functional Impact on Protein-Protein Interactions via Text Mining of the Scientific Literature.	Methods Mol Biol	2017
27216254	miRiaD: A Text Mining Tool for Detecting Associations of microRNAs with Diseases.	J Biomed Semantics	2016
28706471	Scalable Text Mining Assisted Curation of Post-Translationally Modified Proteoforms in the Protein Ontology.	CEUR Workshop Proc	2016
26407127	miRTex: A Text Mining System for miRNA-Gene Relation Extraction.	PLoS Comput Biol	2015
25833953	Construction of phosphorylation interaction networks by text mining of full-length articles using the eFIP system.	Database (Oxford)	2015
26509276	Bioinformatics Knowledge Map for Analysis of Beta-Catenin Function in Cancer.	PLoS One	2015
24270789	Protein Ontology: a controlled structured network of protein entities.	Nucleic Acids Res	2014
23637705	Use of the protein ontology for multi-faceted analysis of biological processes: a case study of the spindle checkpoint.	Front Genet	2013
23749465	Construction of protein phosphorylation networks by data mining, text mining and ontology integration: analysis of the spindle checkpoint.	Database (Oxford)	2013
17495529	The spindle midzone microtubule-associated proteins Ase1p and Cin8p affect the number and orientation of astral microtubules in Saccharomyces cerevisiae.	Cell Cycle	2007
15130497	A role for the FEAR pathway in nuclear positioning during anaphase.	Developmental Cell	2004
15282594	Molecular biology: cohesins slip sliding away.	Nature	2004
15579722	Uncovering novel cell cycle players through the inactivation of securin in budding yeast.	Genetics	2004
14573464	The role of Cdh1p in maintaining genomic stability in budding yeast.	Genetics	2003
12646872	Multitasking at mitotic exit.	Nature Cell Biology	2003
11853993	Separase: a conserved protease separating more than just sisters.	Trends in Cell Biology	2002
10793138	Activating phosphorylation of the Saccharomyces cerevisiae cyclin-dependent kinase, cdc28p, precedes cyclin binding.	Molecular Biology of the Cell	2000
10580002	Dephosphorylation of cyclin-dependent kinases by type 2C protein phosphatases.	Genes and Development	1999
8816777	Immunolocalization of ion transport proteins in human autosomal dominant polycystic kidney epithelial cells.	Proceedings of the National Academy of Sciences of the United States of America	1996