Author details

Full Name

Nancy R Zhang

Affiliation

ORCID

Career Start Year

2007

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37523521	Quantifying common and distinct information in single-cell multimodal data with Tilted Canonical Correlation Analysis.		2023
36239989	Colorectal Cancer Metastases in the Liver Establish Immunosuppressive Spatial Networking between Tumor-Associated SPP1+ Macrophages and Fibroblasts.	Clinical Cancer Research	2023
37215021	Signal recovery in single cell batch integration.	bioRxiv	2023
37468586	Organization of the human intestine at single-cell resolution.	Nature	2023
36711792	Integration of spatial and single-cell data across modalities with weak linkage.	bioRxiv	2023
36747708	Clonal cell states link Barrett's esophagus and esophageal adenocarcinoma.		2023
36993612	Single cell and spatial alternative splicing analysis with long read sequencing.		2023
36417885	Systematic single-cell pathway analysis to characterize early TÂ cell activation.	Cell Reports	2022
36055233	Nonparametric single-cell multiomic characterization of trio relationships between transcription factors, target genes, and cis-regulatory regions.	Cell Syst	2022
34605044	Single cell biology-a Keystone Symposia report.	Ann N Y Acad Sci	2021
33899735	A Mendelian randomization study of the role of lipoprotein subfractions in coronary artery disease.	Elife	2021
34157017	Causal inference for heritable phenotypic risk factors using heterogeneous genetic instruments.	PLoS Genet	2021
31937348	DENDRO: genetic heterogeneity profiling and subclone detection by single-cell RNA sequencing.		2020
32005835	Surface protein imputation from single cell transcriptomes by deep neural networks.	Nature Communications	2020
30670690	Bulk tissue cell type deconvolution with multi-subject single-cell expression reference.	Nat Commun	2019
31852798	Elite control of HIV is associated with distinct functional and transcriptional signatures in lymphoid tissue CD8<sup>+</sup> T cells.	Sci Transl Med	2019
31840051	Semblance: An empirical similarity kernel on probability spaces.	Science advances	2019
31775049	Cell-Type-Specific Complement Expression in the Healthy and Diseased Retina.	Cell Rep	2019
31471617	Data denoising with transfer learning in single-cell transcriptomics.	Nature Methods	2019
28159966	DNA copy number profiling using single-cell sequencing.	Briefings in Bioinformatics	2018
29982625	SVEngine: an efficient and versatile simulator of genome structural variations with features of cancer clonal evolution.	GigaScience	2018
29880495	First Giant Steps Toward a Cell Atlas of Atherosclerosis.	Circ Res	2018
30477554	CODEX2: full-spectrum copy number variation detection by high-throughput DNA sequencing.	Genome Biol	2018
29946020	Gene expression distribution deconvolution in single-cell RNA sequencing.	Proceedings of the National Academy of Sciences of the United States of America	2018
29992253	Integrative DNA copy number detection and genotyping from sequencing and array-based platforms.		2018
29941873	SAVER: gene expression recovery for single-cell RNA sequencing.	Nature Methods	2018
29186506	Identification of large rearrangements in cancer genomes with barcode linked reads.	Nucleic Acids Research	2018
29339533	Learning-dependent chromatin remodeling highlights noncoding regulatory regions linked to autism.	Sci Signal	2018
29603714	Sensitivity analysis and power for instrumental variable studies.	Biometrics	2018
29415173	Integrative pipeline for profiling DNA copy number and inferring tumor phylogeny.		2018
29177190	Functional germline variants as potential co-oncogenes.	npj Breast Cancer	2017
28989557	ALLELE-SPECIFIC COPY NUMBER ESTIMATION BY WHOLE EXOME SEQUENCING.	Ann Appl Stat	2017
28446220	SCALE: modeling allele-specific gene expression by single-cell RNA sequencing.		2017
28786410	Corrigendum: Allelic variation contributes to bacterial host specificity.	Nat Commun	2017
28831036	BRCA locus-specific loss of heterozygosity in germline BRCA1 and BRCA2 carriers.	Nat Commun	2017
29036714	Accounting for technical noise in differential expression analysis of single-cell RNA sequencing data.	Nucleic Acids Research	2017
29141224	Genetic and Genomic Characterization of 462 Melanoma Patient-Derived Xenografts, Tumor Biopsies, and Cell Lines.	Cell Rep	2017
27573852	Assessing intratumor heterogeneity and tracking longitudinal and spatial clonal evolutionary history by next-generation sequencing.	Proceedings of the National Academy of Sciences of the United States of America	2016
27325742	A genome-wide approach for detecting novel insertion-deletion variants of mid-range size.	Nucleic Acids Research	2016
26576652	Global copy number profiling of cancer genomes.		2016
26538451	Emergence of Hemagglutinin Mutations During the Course of Influenza Infection.	Scientific Reports	2015
25618849	CODEX: a normalization and copy number variation detection method for whole exome sequencing.	Nucleic Acids Res	2015
25477383	Allele-specific copy number profiling by next-generation DNA sequencing.	Nucleic Acids Research	2015
26515720	Allelic variation contributes to bacterial host specificity.	Nat Commun	2015
26040834	Memory acquisition and retrieval impact different epigenetic processes that regulate gene expression.	BMC Genomics	2015
25315765	Metastatic tumor evolution and organoid modeling implicate TGFBR2 as a cancer driver in diffuse gastric cancer.	Genome Biol	2014
24511426	Identification of Insertion Deletion Mutations from Deep Targeted Resequencing.		2013
22013163	Ultrasensitive detection of rare mutations using next-generation targeted resequencing.	Nucleic Acids Res	2012
22885689	Genome-wide association study of multiplex schizophrenia pedigrees.	Am J Psychiatry	2012
22064853	A cross-sample statistical model for SNP detection in short-read sequencing data.	Nucleic Acids Research	2012