Author details

Full Name

Andrew J Mungall

Affiliation

ORCID

Career Start Year

1996

Papers

192

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37918557	SETD1A variant-associated psychosis: A systematic review of the clinical literature and description of two new cases.	Prog Neuropsychopharmacol Biol Psychiatry	2024
36982943	Immune Activation following Irbesartan Treatment in a Colorectal Cancer Patient: A Case Study.	Int J Mol Sci	2023
36302166	Molecular determinants of clinical outcomes in a real-world diffuse large B-cell lymphoma population.	Blood	2023
37875130	Assembly and annotation of the black spruce genome provide insights on spruce phylogeny and evolution of stress response.	G3 (Bethesda)	2023
37961641	Genomic structures and regulation patterns at HPV integration sites in cervical cancer.	bioRxiv	2023
37551834	A high-throughput pipeline for DNA/RNA/small RNA purification from tissue samples for sequencing.	Biotechniques	2023
37084389	Genetic subdivisions of follicular lymphoma defined by distinct coding and noncoding mutation patterns.	Blood	2023
37455852	The genome sequence of the Loggerhead sea turtle, <i>Caretta caretta</i> Linnaeus 1758.	F1000Res	2023
36797466	Defining the heterogeneity of unbalanced structural variation underlying breast cancer susceptibility by nanopore genome sequencing.	Eur J Hum Genet	2023
34907396	Retraction Note: Tumor necrosis factor overcomes immune evasion in p53-mutant medulloblastoma.	Nat Neurosci	2022
35691590	Whole-genome and transcriptome analysis enhances precision cancer treatment options.	Ann Oncol	2022
36209277	Integrative analysis of KRAS wildtype metastatic pancreatic ductal adenocarcinoma reveals mutation and expression-based similarities to cholangiocarcinoma.	Nat Commun	2022
35789009	Spruce giga-genomes: structurally similar yet distinctive with differentially expanding gene families and rapidly evolving genes.	Plant J	2022
34687784	Optimization of magnetic bead-based nucleic acid extraction for SARS-CoV-2 testing using readily available reagents.	J Virol Methods	2022
35257510	The impact of whole genome and transcriptome analysis (WGTA) on predictive biomarker discovery and diagnostic accuracy of advanced malignancies.	J Pathol Clin Res	2022
34644566	Proteotranscriptomic classification and characterization of pancreatic neuroendocrine neoplasms.	Cell Rep	2021
33741928	The transcriptional landscape of Shh medulloblastoma.	Nat Commun	2021
34163070	Clonal fitness inferred from time-series modelling of single-cell cancer genomes.	Nature	2021
34149808	A Scalable Strand-Specific Protocol Enabling Full-Length Total RNA Sequencing From Single Cells.	Front Genet	2021
33931648	A clinical transcriptome approach to patient stratification and therapy selection in acute myeloid leukemia.	Nat Commun	2021
33372414	Tumor infiltrating neutrophils and gland formation predict overall survival and molecular subgroups in pancreatic ductal adenocarcinoma.	Cancer Med	2021
33148671	Uncovering Clinically Relevant Gene Fusions with Integrated Genomic and Transcriptomic Profiling of Metastatic Cancers.	Clin Cancer Res	2021
32817292	Molecular attributes underlying central nervous system and systemic relapse in diffuse large B-cell lymphoma.	Haematologica	2021
33135777	Whole-slide laser microdissection for tumour enrichment.	J Pathol	2021
33020056	Genome and Transcriptome Biomarkers of Response to Immune Checkpoint Inhibitors in Advanced Solid Tumors.	Clin Cancer Res	2021
32958704	Delving into Early-onset Pancreatic Ductal Adenocarcinoma: How Does Age Fit In?	Clin Cancer Res	2021
33120427	The impact of MYC and BCL2 structural variants in tumors of DLBCL morphology and mechanisms of false-negative MYC IHC.	Blood	2021
33051307	Subtype-Discordant Pancreatic Ductal Adenocarcinoma Tumors Show Intermediate Clinical and Molecular Characteristics.	Clin Cancer Res	2021
34700376	Modulation of the Host Cell Transcriptome and Epigenome by Fusobacterium nucleatum.	mBio	2021
31481506	Altered Gene Expression along the Glycolysis-Cholesterol Synthesis Axis Is Associated with Outcome in Pancreatic Cancer.	Clin Cancer Res	2020
32424282	Tumor necrosis factor overcomes immune evasion in p53-mutant medulloblastoma.	Nat Neurosci	2020
31837431	Sample Tracking Using Unique Sequence Controls.	J Mol Diagn	2020
32160292	Coding and noncoding drivers of mantle cell lymphoma identified through exome and genome sequencing.	Blood	2020
32094924	TMEM30A loss-of-function mutations drive lymphomagenesis and confer therapeutically exploitable vulnerability in B-cell lymphoma.	Nat Med	2020
32972944	Complete Chloroplast Genome Sequence of a Black Spruce (Picea mariana) from Eastern Canada.	Microbiol Resour Announc	2020
32747824	Analysis of Ugandan cervical carcinomas identifies human papillomavirus clade-specific epigenome and transcriptome landscapes.	Nat Genet	2020
32518206	Endogenous Retrovirus Transcript Levels Are Associated with Immunogenic Signatures in Multiple Metastatic Cancer Types.	Mol Cancer Ther	2020
32577165	Tumor microRNA profile and prognostic value for lymph node metastasis in oral squamous cell carcinoma patients.	Oncotarget	2020
32624572	Improved structural variant interpretation for hereditary cancer susceptibility using long-read sequencing.	Genet Med	2020
32677466	Epigenomic programming in early fetal brain development.	Epigenomics	2020
33335541	A Distributed Whole Genome Sequencing Benchmark Study.	Front Genet	2020
35121966	Pan-cancer analysis of advanced patient tumors reveals interactions between therapy and genomic landscapes.	Nat Cancer	2020
31196920	Complete Chloroplast Genome Sequence of an Engelmann Spruce (<i>Picea engelmannii</i>, Genotype Se404-851) from Western Canada.	Microbiol Resour Announc	2019
31623682	Dissociation of solid tumor tissues with cold active protease for single-cell RNA-seq minimizes conserved collagenase-associated stress responses.	Genome Biol	2019
31671154	Evaluation of protocols for rRNA depletion-based RNA sequencing of nanogram inputs of mammalian total RNA.	PLoS One	2019
31708418	Identification and Analyses of Extra-Cranial and Cranial Rhabdoid Tumor Molecular Subgroups Reveal Tumors with Cytotoxic T Cell Infiltration.	Cell Rep	2019
35100702	Therapeutic Implication of Genomic Landscape of Adult Metastatic Sarcoma.	JCO Precis Oncol	2019
30514790	Clinical outcomes after whole-genome sequencing in patients with metastatic non-small-cell lung cancer.	Cold Spring Harb Mol Case Stud	2019
30016509	MAVIS: merging, annotation, validation, and illustration of structural variants.	Bioinformatics	2019
30418619	Sources of erroneous sequences and artifact chimeric reads in next generation sequencing of genomic DNA from formalin-fixed paraffin-embedded samples.	Nucleic Acids Res	2019