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Author Details

Marina Bessarabova
Thomson Reuters Scientific Inc.
2009
17
15
Trey Ideker (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
26107615Development of a Drug-Response Modeling Framework to Identify Cell Line Derived Translational Biomarkers That Can Predict Treatment Outcome to Erlotinib or Sorafenib.PLoS One2015
26109056Comparison of RNA-seq and microarray-based models for clinical endpoint prediction.Genome Biol2015
24937458JARID1B is a luminal lineage-driving oncogene in breast cancer.Cancer Cell2014
25633159An investigation of biomarkers derived from legacy microarray data for their utility in the RNA-seq era.Genome Biol2014
25150839The concordance between RNA-seq and microarray data depends on chemical treatment and transcript abundance.Nat Biotechnol2014
24817247An integrated map of HIV-human protein complexes that facilitate viral infection.PLoS One2014
23770079Molecular profiling of human mammary gland links breast cancer risk to a p27(+) cell population with progenitor characteristics.Cell Stem Cell2013
23593264Drug target prediction and repositioning using an integrated network-based approach.PLoS One2013
21098291Altered antisense-to-sense transcript ratios in breast cancer.Proc Natl Acad Sci U S A2012
23176192Knowledge-based analysis of proteomics data.BMC Bioinformatics2012
21398405Functional synergies yet distinct modulators affected by genetic alterations in common human cancers.Cancer Res2011
21533021Epigenetic regulation of cell type-specific expression patterns in the human mammary epithelium.PLoS Genet2011
21633165The JAK2/STAT3 signaling pathway is required for growth of CD44⁺CD24⁻ stem cell-like breast cancer cells in human tumors.J Clin Invest2011
20158879Bimodal gene expression patterns in breast cancer.BMC Genomics2010
21045080Gene expression profiling of human breast tissue samples using SAGE-Seq.Genome Res2010
20676069Functional analysis of multiple genomic signatures demonstrates that classification algorithms choose phenotype-related genes.Pharmacogenomics J2010
19776212Use of short-term transcriptional profiles to assess the long-term cancer-related safety of environmental and industrial chemicals.Toxicol Sci2009
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Collaborators

Yuri Nikolsky
Co-authored papers 14
Tatiana Nikolskaya
Co-authored papers 9
Kornelia Polyak
Dana-Farber Cancer Institute, Brigham and Women's Hospital, Harvard Medical School
Co-authored papers 7
Xiaole Shirley Liu
Co-authored papers 6
Weida Tong
National Center for Toxicological Research
Co-authored papers 4
Olga Pustovalova
Thomson Reuters Scientific Inc.
Co-authored papers 4
Ming Shi
Co-authored papers 4
Huixiao Hong
Co-authored papers 3
Cesare Furlanello
Bruno Kessler Foundation
Co-authored papers 3
Weiwei Shi
Co-authored papers 3
Zhenqiang Su
Co-authored papers 3
Joshua Xu
Co-authored papers 3
Jean Thierry-Mieg
Co-authored papers 2
Youping Deng
John A. Burns School of Medicine, University of Hawaii at Manoa
Co-authored papers 2
Joe Meehan
Co-authored papers 2
Danielle Thierry-Mieg
Co-authored papers 2
Russell S Thomas
Co-authored papers 2
Baitang Ning
Co-authored papers 2
Viswanath Devanarayan
Clinical Evidence Generation, Eisai Inc.
Co-authored papers 2
Giuseppe Jurman
Data Science for Health Research Unit, Bruno Kessler Foundation
Co-authored papers 2
Matthias Fischer
University Children's Hospital of Cologne
Co-authored papers 2
Marco Chierici
Fondazione Bruno Kessler
Co-authored papers 2
Davide Albanese
Fondazione Edmund Mach
Co-authored papers 2
Charles Wang
Co-authored papers 2
Hong Fang
National Center for Toxicological Research (NCTR)
Co-authored papers 2
Wenjun Bao
SAS Institute Inc Cary
Co-authored papers 2
Russell D Wolfinger
SAS Institute
Co-authored papers 2
Andrea L Richardson
Co-authored papers 2
Dorothea Emig
Departments of Bioinformatics and Clinical Genomics, Illumina Inc.
Co-authored papers 2
Tieliu Shi
Co-authored papers 2
Release 1.2