Author details

Full Name

BÃ¼lent Arman Aksoy

Affiliation

ORCID

Career Start Year

2012

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36472581	The Combination of TIM3-Based Checkpoint Blockade and Oncolytic Virotherapy Regresses Established Solid Tumors.	Journal of Immunotherapy	2023
37801615	Progressively enhancing stemness of adoptively transferred T cells with PI3KÎ´ blockade improves metabolism and anti-tumor immunity.		2023
32581062	Initial dose of oncolytic myxoma virus programs durable antitumor immunity independent of in vivo viral replication.	Journal for ImmunoTherapy of Cancer	2020
31647099	Pathway Commons 2019 Update: integration, analysis and exploration of pathway data.	Nucleic Acids Res	2020
31239316	Anti-CTLA-4 Activates Intratumoral NK Cells and Combined with IL15/IL15RÎ± Complexes Enhances Tumor Control.	Cancer Immunol Res	2019
31477013	Cytokit: a single-cell analysis toolkit for high dimensional fluorescent microscopy imaging.	BMC Bioinformatics	2019
30694219	T cells genetically engineered to overcome death signaling enhance adoptive cancer immunotherapy.	J Clin Invest	2019
31417090	Cancer-associated mutations in DICER1 RNase IIIa and IIIb domains exert similar effects on miRNA biogenesis.	Nat Commun	2019
29396322	A Landscape of Metabolic Variation across Tumor Types.	Cell Syst	2018
30172842	Coral: Clear and Customizable Visualization of Human Kinome Data.	Cell Syst	2018
30108106	<i>KMT2C</i> Mutations in Diffuse-Type Gastric Adenocarcinoma Promote Epithelial-to-Mesenchymal Transition.	Clin Cancer Res	2018
30590044	Mutations in an Innate Immunity Pathway Are Associated with Poor Overall Survival Outcomes and Hypoxic Signaling in Cancer.	Cell Reports	2018
29357823	Chemotherapy weakly contributes to predicted neoantigen expression in ovarian cancer.	BMC Cancer	2018
27956380	Somatic Mutations and Neoepitope Homology in Melanomas Treated with CTLA-4 Blockade.	Cancer Immunol Res	2017
28552987	Contribution of systemic and somatic factors to clinical response and resistance to PD-L1 blockade in urothelial cancer: An exploratory multi-omic analysis.	PLoS Med	2017
29033940	PI3KÎ´ Inhibition Enhances the Antitumor Fitness of Adoptively Transferred CD8 T Cells.	Frontiers in Immunology	2017
29220450	CTD2 Dashboard: a searchable web interface to connect validated results from the Cancer Target Discovery and Development Network.	Database (Oxford)	2017
29403468	Computational Pipeline for the PGV-001 Neoantigen Vaccine Trial.	Frontiers in Immunology	2017
26685306	PaxtoolsR: pathway analysis in R using Pathway Commons.	Bioinformatics	2016
27153605	pileup.js: a JavaScript library for interactive and in-browser visualization of genomic data.		2016
26766592	An Integrated Metabolic Atlas of Clear Cell Renal Cell Carcinoma.	Cancer Cell	2016
26482039	Chemotherapy Resistance in Diffuse-Type Gastric Adenocarcinoma Is Mediated by RhoA Activation in Cancer Stem-Like Cells.	Clin Cancer Res	2016
26061751	Comprehensive, Integrative Genomic Analysis of Diffuse Lower-Grade Gliomas.	N Engl J Med	2015
25887147	Systematic identification of cancer driving signaling pathways based on mutual exclusivity of genomic alterations.	Genome Biol	2015
27135912	Pan-Cancer Analysis of Mutation Hotspots in Protein Domains.	Cell Syst	2015
26030594	SBGNViz: A Tool for Visualization and Complexity Management of SBGN Process Description Maps.	PLoS One	2015
26284497	Perturbation biology nominates upstream-downstream drug combinations in RAF inhibitor resistant melanoma cells.	Elife	2015
25086704	Integrating biological pathways and genomic profiles with ChiBE 2.	BMC Genomics	2014
24045775	Pattern search in BioPAX models.	Bioinformatics	2014
24665131	Prediction of individualized therapeutic vulnerabilities in cancer from genomic profiles.	Bioinformatics	2014
23504936	Using MEMo to discover mutual exclusivity modules in cancer.	Curr Protoc Bioinformatics	2013
23550210	Integrative analysis of complex cancer genomics and clinical profiles using the cBioPortal.	Sci Signal	2013
23749186	Genome-wide inference of natural selection on human transcription factor binding sites.	Nature Genetics	2013
24068901	Using biological pathway data with paxtools.	PLoS Comput Biol	2013
24071851	Emerging landscape of oncogenic signatures across human cancers.	Nat Genet	2013
23766416	PiHelper: an open source framework for drug-target and antibody-target data.	Bioinformatics	2013
22588877	The cBio cancer genomics portal: an open platform for exploring multidimensional cancer genomics data.	Cancer Discov	2012