Author details

Full Name

Paul Bertone

Affiliation

ORCID

Career Start Year

2000

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36635880	Proximity proteomics reveals role of Abelson interactor 1 in the regulation of TAK1/RIPK1 signaling.		2023
34675200	StemBond hydrogels control the mechanical microenvironment for pluripotent stem cells.	Nature Communications	2021
33857425	Glioblastomas acquire myeloid-affiliated transcriptional programs via epigenetic immunoediting to elicit immune evasion.	Cell	2021
34014842	The Role of BCL-2 Proteins in the Development of Castration-resistant Prostate Cancer and Emerging Therapeutic Strategies.	American Journal of Clinical Oncology: Cancer Clinical Trials	2021
33665571	Sox2 modulation increases naÃ¯ve pluripotency plasticity.	iScience	2021
31999189	Motivational interviewing with male couples to reduce substance use and HIV risk: Manifestations of partner discord and strategies for facilitating dyadic functioning.	Psychotherapy	2020
31422912	Distinct Molecular Trajectories Converge to Induce Naive Pluripotency.	Cell Stem Cell	2019
29361568	Integrated analysis of single-cell embryo data yields a unified transcriptome signature for the human pre-implantation epiblast.	Development (Cambridge)	2018
30068690	Correction: Integrated analysis of single-cell embryo data yields a unified transcriptome signature for the human pre-implantation epiblast (doi:Â 10.1242/dev.158501).	Development (Cambridge)	2018
30008319	The Nucleosome Remodeling and Deacetylation Complex Modulates Chromatin Structure at Sites of Active Transcription to Fine-Tune Gene Expression.	Molecular Cell	2018
30581887	Motivational interviewing with couples: A theoretical framework for clinical practice illustrated in substance use and HIV prevention intervention with gay male couples.	Psychology of Sexual Orientation and Gender Diversity	2018
30414923	Gain of CTCF-Anchored Chromatin Loops Marks the Exit from Naive Pluripotency.	Cell Syst	2018
30413530	Single cell transcriptome analysis of human, marmoset and mouse embryos reveals common and divergent features of preimplantation development.	Development	2018
29669738	Correction: Epigenetic resetting of human pluripotency (doi:10.1242/dev.146811).	Development	2018
29471927	Assessment of the relationship between a written measure of empathy and an independently rated interview of Motivational Interviewing.	Journal of Substance Abuse Treatment	2018
28174249	Tracking the embryonic stem cell transition from ground state pluripotency.	Development	2017
28465359	Elevated FOXG1 and SOX2 in glioblastoma enforces neural stem cell identity through transcriptional control of cell cycle and epigenetic regulators.	Genes Dev	2017
28765214	Epigenetic resetting of human pluripotency.	Development	2017
27471257	Sall4 controls differentiation of pluripotent cells independently of the Nucleosome Remodelling and Deacetylation (NuRD) complex.	Development (Cambridge)	2016
27350048	EphrinB2 drives perivascular invasion and proliferation of glioblastoma stem-like cells.	eLife	2016
26871632	Myc Depletion Induces a Pluripotent Dormant State Mimicking Diapause.	Cell	2016
26725008	Nuclear Architecture Organized by Rif1 Underpins the Replication-Timing Program.	Mol Cell	2016
26947977	Naive Pluripotent Stem Cells Derived Directly from Isolated Cells of the Human Inner Cell Mass.	Stem Cell Reports	2016
26555056	Lineage-Specific Profiling Delineates the Emergence and Progression of Naive Pluripotency in Mammalian Embryogenesis.	Developmental Cell	2015
28843285	Resetting Transcription Factor Control Circuitry toward Ground-State Pluripotency in Human.	Cell	2015
26607953	Glioblastoma Stem Cells Respond to Differentiation Cues but Fail to Undergo Commitment and Terminal Cell-Cycle Arrest.	Stem Cell Reports	2015
24859004	The ability of inner-cell-mass cells to self-renew as embryonic stem cells is acquired following epiblast specification.	Nature Cell Biology	2014
25258084	Transcriptional diversity during lineage commitment of human blood progenitors.	Science	2014
24463520	Citrullination regulates pluripotency and histone H1 binding to chromatin.	Nature	2014
25215486	Resetting transcription factor control circuitry toward ground-state pluripotency in human.	Cell	2014
23512659	Widespread resetting of DNA methylation in glioblastoma-initiating cells suppresses malignant cellular behavior in a lineage-dependent manner.	Genes Dev	2013
24044525	The non-coding snRNA 7SK controls transcriptional termination, poising, and bidirectionality in embryonic stem cells.		2013
24204733	A high-content small molecule screen identifies sensitivity of glioblastoma stem cells to inhibition of polo-like kinase 1.	PLoS One	2013
23942233	Identification of the missing pluripotency mediator downstream of leukaemia inhibitory factor.	EMBO Journal	2013
24185837	Assessment of transcript reconstruction methods for RNA-seq.	Nat Methods	2013
24185836	Systematic evaluation of spliced alignment programs for RNA-seq data.	Nat Methods	2013
23563608	SMIM1 underlies the Vel blood group and influences red blood cell traits.	Nat Genet	2013
23354052	Towards practical, high-capacity, low-maintenance information storage in synthesized DNA.	Nature	2013
22139358	NuRD-mediated deacetylation of H3K27 facilitates recruitment of Polycomb Repressive Complex 2 to direct gene repression.	EMBO J	2012
22696295	Genome-wide characterization of Foxa2 targets reveals upregulation of floor plate genes and repression of ventrolateral genes in midbrain dopaminergic progenitors.	Development	2012
22366785	Compound inheritance of a low-frequency regulatory SNP and a rare null mutation in exon-junction complex subunit RBM8A causes TAR syndrome.	Nat Genet	2012
22560079	NuRD suppresses pluripotency gene expression to promote transcriptional heterogeneity and lineage commitment.		2012
23046790	Digital transcriptome profiling of normal and glioblastoma-derived neural stem cells identifies genes associated with patient survival.	Genome Medicine	2012
21765411	Exome sequencing identifies NBEAL2 as the causative gene for gray platelet syndrome.	Nat Genet	2011
20360395	Systematic comparison of microarray profiling, real-time PCR, and next-generation sequencing technologies for measuring differential microRNA expression.	RNA	2010
20691053	PeakAnalyzer: genome-wide annotation of chromatin binding and modification loci.	BMC Bioinformatics	2010
19808880	HTqPCR: high-throughput analysis and visualization of quantitative real-time PCR data in R.	Bioinformatics	2009
19317464	Mapping organelle proteins and protein complexes in Drosophila melanogaster.	J Proteome Res	2009
18394553	Modeling of C/EBPalpha mutant acute myeloid leukemia reveals a common expression signature of committed myeloid leukemia-initiating cells.	Cancer Cell	2008
18510926	Genome-wide analysis reveals MOF as a key regulator of dosage compensation and gene expression in Drosophila.	Cell	2008