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Author Details

David Vallenet
Institut Francois Jacob, CNRS, Universite d'Evry, Universite Paris-Saclay
2003
79
41
Gloria M Sheynkman (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36800363A novel binary pesticidal protein from Chryseobacterium arthrosphaerae controls western corn rootworm by a different mode of action to existing commercial pesticidal proteins.PLoS One2023
37002859A model industrial workhorse: Bacillus subtilis strain 168 and its genome after a quarter of a century.Microb Biotechnol2023
36520398Analyzing Prokaryotic Transcriptomics in the Light of Genome Data with the MicroScope Platform.Methods Mol Biol2023
35961013A roadmap for the functional annotation of protein families: a community perspective.Database (Oxford)2022
35758722Complete Genome Sequence of <i>Tepidibacter</i> sp. Strain 8C15b, Isolated from Bank Sediments of Haiphong Bay, Vietnam.Microbiol Resour Announc2022
36037393Magnetosome proteins belong to universal protein families involved in many cell processes.Proc Natl Acad Sci U S A2022
34576819From Strain Characterization to Field Authorization: Highlights on <i>Bacillus velezensis</i> Strain B25 Beneficial Properties for Plants and Its Activities on Phytopathogenic Fungi.Microorganisms2021
33888508Complete Genome Sequences of Two <i>Pseudomonas</i> Species Isolated from Marine Environments of the Pacific Ocean.Microbiol Resour Announc2021
34890406Correction: PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome graph.PLoS Comput Biol2021
32191703PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome graph.PLoS Comput Biol2020
31647104MicroScope: an integrated platform for the annotation and exploration of microbial gene functions through genomic, pangenomic and metabolic comparative analysis.Nucleic Acids Res2020
33172901Erratum for Jouault et al., "Alterocin, an Antibiofilm Protein Secreted by <i>Pseudoalteromonas</i> sp. Strain 3J6".Appl Environ Microbiol2020
33139723Construction of a complete set of Neisseria meningitidis mutants and its use for the phenotypic profiling of this human pathogen.Nat Commun2020
33381850panRGP: a pangenome-based method to predict genomic islands and explore their diversity.Bioinformatics2020
32769182Alterocin, an Antibiofilm Protein Secreted by <i>Pseudoalteromonas</i> sp. Strain 3J6.Appl Environ Microbiol2020
28968784MicroScope-an integrated resource for community expertise of gene functions and comparative analysis of microbial genomic and metabolic data.Brief Bioinform2019
31036911Ectosymbiotic bacteria at the origin of magnetoreception in a marine protist.Nat Microbiol2019
29280348Bacillus subtilis, the model Gram-positive bacterium: 20 years of annotation refinement.Microb Biotechnol2018
30026595Transcriptome Profiles of Nod Factor-independent Symbiosis in the Tropical Legume Aeschynomene evenia.Sci Rep2018
30524390Evolutionary Evidence of Algal Polysaccharide Degradation Acquisition by <i>Pseudoalteromonas carrageenovora</i> 9<sup>T</sup> to Adapt to Macroalgal Niches.Front Microbiol2018
30265232PlaScope: a targeted approach to assess the plasmidome from genome assemblies at the species level.Microb Genom2018
29642842GROOLS: reactive graph reasoning for genome annotation through biological processes.BMC Bioinformatics2018
29404421The Odyssey of the Ancestral Escherich Strain through Culture Collections: an Example of Allopatric Diversification.mSphere2018
27899624MicroScope in 2017: an expanding and evolving integrated resource for community expertise of microbial genomes.Nucleic Acids Res2017
28397370Conservation and diversity of the IrrE/DdrO-controlled radiation response in radiation-resistant Deinococcus bacteria.Microbiologyopen2017
29220487Ancestral Genome Estimation Reveals the History of Ecological Diversification in Agrobacterium.Genome Biol Evol2017
29162826Carrageenan catabolism is encoded by a complex regulon in marine heterotrophic bacteria.Nat Commun2017
28751380Complete Genome Sequence of <i>Bradyrhizobium</i> sp. ORS285, a Photosynthetic Strain Able To Establish Nod Factor-Dependent or Nod Factor-Independent Symbiosis with <i>Aeschynomene</i> Legumes.Genome Announc2017
28926556Corrigendum: Parallel evolution of non-homologous isofunctional enzymes in methionine biosynthesis.Nat Chem Biol2017
28581482Parallel evolution of non-homologous isofunctional enzymes in methionine biosynthesis.Nat Chem Biol2017
26913973The revisited genome of Pseudomonas putida KT2440 enlightens its value as a robust metabolic chassis.Environ Microbiol2016
26966215Complete Genome Sequence of Bacillus methylotrophicus Strain B25, a Potential Plant Growth-Promoting Rhizobacterium.Genome Announc2016
26573681A new network representation of the metabolism to detect chemical transformation modules.BMC Bioinformatics2015
24240508Revealing the hidden functional diversity of an enzyme family.Nat Chem Biol2014
24906382Profiling the orphan enzymes.Biol Direct2014
24723731RNA sequencing and proteogenomics reveal the importance of leaderless mRNAs in the radiation-tolerant bacterium Deinococcus deserti.Genome Biol Evol2014
23193269MicroScope--an integrated microbial resource for the curation and comparative analysis of genomic and metabolic data.Nucleic Acids Res2013
23622346The Nocardia cyriacigeorgica GUH-2 genome shows ongoing adaptation of an environmental Actinobacteria to a pathogen's lifestyle.BMC Genomics2013
23429746An updated metabolic view of the Bacillus subtilis 168 genome.Microbiology (Reading)2013
23425606Comparative genomics of the core and accessory genomes of 48 Sinorhizobium strains comprising five genospecies.Genome Biol2013
23589360Life in an arsenic-containing gold mine: genome and physiology of the autotrophic arsenite-oxidizing bacterium rhizobium sp. NT-26.Genome Biol Evol2013
22333191Distinct co-evolution patterns of genes associated to DNA polymerase III DnaE and PolC.BMC Genomics2012
22693442The CanOE strategy: integrating genomic and metabolic contexts across multiple prokaryote genomes to find candidate genes for orphan enzymes.PLoS Comput Biol2012
22815450Genome sequence of Micromonospora lupini Lupac 08, isolated from root nodules of Lupinus angustifolius.J Bacteriol2012
22461543Genome sequence of the human- and animal-pathogenic strain Nocardia cyriacigeorgica GUH-2.J Bacteriol2012
21239590Core and panmetabolism in Escherichia coli.J Bacteriol2011
24704842Comparative genomics of aeschynomene symbionts: insights into the ecological lifestyle of nod-independent photosynthetic bradyrhizobia.Genes (Basel)2011
22092178Characterization and distribution of the gene cluster encoding RumC, an anti-Clostridium perfringens bacteriocin produced in the gut.FEMS Microbiol Ecol2011
21868806Complete genome sequence of Streptomyces cattleya NRRL 8057, a producer of antibiotics and fluorometabolites.J Bacteriol2011
21826218A novel acyl-CoA beta-transaminase characterized from a metagenome.PLoS One2011
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Collaborators

Institut Francois Jacob, CNRS, Universite Paris-Saclay
Co-authored papers 17
University of Hong Kong
Co-authored papers 12
Centre Medical Universitaire
Co-authored papers 3
Icahn School of Medicine at Mount Sinai
Co-authored papers 2
University of Florida
Co-authored papers 1
National Center for Biotechnology Information, National Institutes of Health
Co-authored papers 1
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 1
University of Florida
Co-authored papers 1
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Google Research
Co-authored papers 1
carnegie mellon university
Co-authored papers 1
Institute for Integrative Systems Biology, Spanish National Research Council (CSIC)
Co-authored papers 1
University of Florida Citrus Research and Education Center
Co-authored papers 1
Center for Innate Immunity and Immune Disease, University of Washington
Co-authored papers 1
Co-authored papers 1
Co-authored papers 1
Genetics Institute, University of Florida
Co-authored papers 1
University of Florida
Co-authored papers 1
National Center for Genome Resources
Co-authored papers 1
University of Delaware
Co-authored papers 1
Global Health Institute, Ecole Polytechnique Federale de Lausanne (EPFL)
Co-authored papers 1
Lawrence Berkeley National Laboratory
Co-authored papers 1
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Center for the Study of Biological Complexity, Virginia Commonwealth University
Co-authored papers 1
New England Biolabs Inc.
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Iowa State University
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University of California at San Diego
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University of Cambridge
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Altius Institute for Biomedical Sciences
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