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Author Details

Cristal Zu??iga
University of California
2011
33
15
PMIDPaper TitleJournal TitlePublished Year
36922521Optimization of nutrient utilization efficiency and productivity for algal cultures under light and dark cycles using genome-scale model process control.NPJ Syst Biol Appl2023
37556472The genome-scale metabolic model for the purple non-sulfur bacterium Rhodopseudomonas palustris Bis A53 accurately predicts phenotypes under chemoheterotrophic, chemoautotrophic, photoheterotrophic, and photoautotrophic growth conditions.PLoS Comput Biol2023
37678664Metabolic engineering of Synechococcus elongatus 7942 for enhanced sucrose biosynthesis.Metab Eng2023
37002859A model industrial workhorse: Bacillus subtilis strain 168 and its genome after a quarter of a century.Microb Biotechnol2023
35108266Flux balance analysis of the ammonia-oxidizing bacterium Nitrosomonas europaea ATCC19718 unravels specific metabolic activities while degrading toxic compounds.PLoS Comput Biol2022
36575180Predicting stress response and improved protein overproduction in Bacillus subtilis.NPJ Syst Biol Appl2022
35888727Multi-Objective Optimization of Microalgae Metabolism: An Evolutive Algorithm Based on FBA.Metabolites2022
34091124Biotechnology for secure biocontainment designs in an emerging bioeconomy.Curr Opin Biotechnol2021
33561703The sum is greater than the parts: exploiting microbial communities to achieve complex functions.Curr Opin Biotechnol2021
35050136Genome-Scale Metabolic Modeling Enables In-Depth Understanding of Big Data.Metabolites2021
34410641Host DNA Depletion in Saliva Samples for Improved Shotgun Metagenomics.Methods Mol Biol2021
34293631Kinetic, metabolic, and statistical analytics: addressing metabolic transport limitations among organelles and microbial communities.Curr Opin Biotechnol2021
32551229Modeling of nitrogen fixation and polymer production in the heterotrophic diazotroph <i>Azotobacter vinelandii</i> DJ.Metab Eng Commun2020
32732991Synthetic microbial communities of heterotrophs and phototrophs facilitate sustainable growth.Nat Commun2020
32753656Linking metabolic phenotypes to pathogenic traits among "Candidatus Liberibacter asiaticus" and its hosts.NPJ Syst Biol Appl2020
32415097Dynamic resource allocation drives growth under nitrogen starvation in eukaryotes.NPJ Syst Biol Appl2020
30625152A computational knowledge-base elucidates the response of Staphylococcus aureus to different media types.PLoS Comput Biol2019
31690826Author Correction: Environmental stimuli drive a transition from cooperation to competition in synthetic phototrophic communities.Nat Microbiol2019
31583115Utilizing genome-scale models to optimize nutrient supply for sustained algal growth and lipid productivity.NPJ Syst Biol Appl2019
31548686Gut bacteria responding to dietary change encode sialidases that exhibit preference for red meat-associated carbohydrates.Nat Microbiol2019
31344036Ten simple rules for writing and sharing computational analyses in Jupyter Notebooks.PLoS Comput Biol2019
31591554Environmental stimuli drive a transition from cooperation to competition in synthetic phototrophic communities.Nat Microbiol2019
28951490Predicting Dynamic Metabolic Demands in the Photosynthetic Eukaryote <i>Chlorella vulgaris</i>.Plant Physiol2018
30202436Advances in metabolic modeling of oleaginous microalgae.Biotechnol Biofuels2018
30367068Optimization of carbon and energy utilization through differential translational efficiency.Nat Commun2018
29605779A systematic comparison of two empirical gas-liquid mass transfer determination methodologies to characterize methane biodegradation in stirred tank bioreactors.J Environ Manage2018
29482639Improving saliva shotgun metagenomics by chemical host DNA depletion.Microbiome2018
28818899Draft Genome Sequence of <i>Sphingobacterium</i> sp. CZ-UAM, Isolated from a Methanotrophic Consortium.Genome Announc2017
28925555Elucidation of complexity and prediction of interactions in microbial communities.Microb Biotechnol2017
27372244Genome-Scale Metabolic Model for the Green Alga Chlorella vulgaris UTEX 395 Accurately Predicts Phenotypes under Autotrophic, Heterotrophic, and Mixotrophic Growth Conditions.Plant Physiol2016
25935300Unraveling interactions in microbial communities - from co-cultures to microbiomes.J Microbiol2015
23298771Polyhydroxyalkanoates accumulation by Methylobacterium organophilum CZ-2 during methane degradation using citrate or propionate as cosubstrates.Bioresour Technol2013
21530080Production of poly-β-hydroxybutyrate (PHB) by Methylobacterium organophilum isolated from a methanotrophic consortium in a two-phase partition bioreactor.J Hazard Mater2011
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Collaborators

Clarisse Marotz
University of California San Diego
Co-authored papers 3
Bernhard O Palsson
University of California San Diego
Co-authored papers 2
Maciek R Antoniewicz
Massachusetts Institute of Technology
Co-authored papers 2
Rob Knight
university of california san diego
Co-authored papers 1
Benjamin P Kellman
Co-authored papers 1
Antoine Danchin
University of Hong Kong
Co-authored papers 1
Jacob M Wozniak
The Scripps Research Institute
Co-authored papers 1
Niema Moshiri
Bonita Vista High School, University of California San Diego, University of California, San Diego
Co-authored papers 1
Shih-Cheng Huang
university of california san diego
Co-authored papers 1
David Vallenet
Institut Francois Jacob, CNRS, Universite d'Evry, Universite Paris-Saclay
Co-authored papers 1
Ilkay Altintas
Halicioglu Data Science Institute, University of California San Diego
Co-authored papers 1
David J Gonzalez
Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California
Co-authored papers 1
Mai Nguyen
University of California Riverside
Co-authored papers 1
Jamey D Young
Co-authored papers 1
Sara Brin Rosenthal
Center for Computational Biology and Bioinformatics, University of California
Co-authored papers 1
Rob Knight
University of California
Co-authored papers 1
Fernando Perez
E.O. Lawrence Berkeley National Laboratory
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Geoffrey Chang
Skaggs School of Pharmacy and Pharmaceutical Sciences.
Co-authored papers 1
Amanda Birmingham
Center for Computational Biology & Bioinformatics , University of California
Co-authored papers 1
Cameron Martino
Center for Microbiome Innovation, University of California San Diego
Co-authored papers 1
Peter W Rose
University of California
Co-authored papers 1
Adam Rule
University of Wisconsin-Madison
Co-authored papers 1
Young-Mo Kim
Hanyang University
Co-authored papers 1
Release 1.2