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Author Details

James D Wasmuth
University of Calgary
2004
46
25
Nevan J Krogan (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37246221Transcriptional patterns of sexual dimorphism and in host developmental programs in the model parasitic nematode Heligmosomoides bakeri.Parasit Vectors2023
37953771Identification of potential molecular mimicry in pathogen-host interactions.PeerJ2023
35112896Draft Hybrid Genome Assembly of a Canadian Cyclospora cayetanensis Isolate.Microbiol Resour Announc2022
36584177Different structural variant prediction tools yield considerably different results in Caenorhabditis elegans.PLoS One2022
36569914Trickle infection with Heligmosomoides polygyrus results in decreased worm burdens but increased intestinal inflammation and scarring.Front Immunol2022
36113620Genomic signatures of selection associated with benzimidazole drug treatments in Haemonchus contortus field populations.Int J Parasitol2022
35208901Genotyping Canadian <i>Cyclospora cayetanensis</i> Isolates to Supplement Cyclosporiasis Outbreak Investigations.Microorganisms2022
34570778Characterization of the β-tubulin gene family in Ascaris lumbricoides and Ascaris suum and its implication for the molecular detection of benzimidazole resistance.PLoS Negl Trop Dis2021
34460289Small Intestinal Levels of the Branched Short-Chain Fatty Acid Isovalerate Are Elevated during Infection with Heligmosomoides polygyrus and Can Promote Helminth Fecundity.Infect Immun2021
32111234Benchmarking hybrid assemblies of Giardia and prediction of widespread intra-isolate structural variation.Parasit Vectors2020
31160924Horizontal transfer of a retrotransposon between parasitic nematodes and the common shrew.Mob DNA2019
29306002Bovine viral diarrhea virus genomic variation within persistently infected cattle.Infect Genet Evol2018
29868279MIPhy: identify and quantify rapidly evolving members of large gene families.PeerJ2018
29722785Improved enzyme annotation with EC-specific cutoffs using DETECT v2.Bioinformatics2018
27350342Expanding the view on the evolution of the nematode dauer signalling pathways: refinement through gene gain and pathway co-option.BMC Genomics2016
25548982Morphological variability and molecular identification of Uncinaria spp. (Nematoda: Ancylostomatidae) from grizzly and black bears: new species or phenotypic plasticity?J Parasitol2015
26630572Exploring the Gastrointestinal "Nemabiome": Deep Amplicon Sequencing to Quantify the Species Composition of Parasitic Nematode Communities.PLoS One2015
25856431Does the arthropod microbiota impact the establishment of vector-borne diseases in mammalian hosts?PLoS Pathog2015
25481007Kablammo: an interactive, web-based BLAST results visualizer.Bioinformatics2015
25115706Figmop: a profile HMM to identify genes and bypass troublesome gene models in draft genomes.Bioinformatics2014
24981572Realizing the promise of parasite genomics.Trends Parasitol2014
23314411HIV infection deregulates Tim-3 expression on innate cells: combination antiretroviral therapy results in partial restoration.J Acquir Immune Defic Syndr2013
24247825Metabolic reconstruction identifies strain-specific regulation of virulence in Toxoplasma gondii.Mol Syst Biol2013
23985316The genome and transcriptome of Haemonchus contortus, a key model parasite for drug and vaccine discovery.Genome Biol2013
23948430Unravelling parasitic nematode natural history using population genetics.Trends Parasitol2013
23416426Characterization and comparative analysis of the complete Haemonchus contortus β-tubulin gene family and implications for benzimidazole resistance in strongylid nematodes.Int J Parasitol2013
23485966The genomes of four tapeworm species reveal adaptations to parasitism.Nature2013
23291537HIV infection deregulates innate immunity to malaria despite combination antiretroviral therapy.AIDS2013
22091999Identification of two novel coccidian species shed by California sea lions (Zalophus californianus).J Parasitol2012
23209850A transcriptomic analysis of Echinococcus granulosus larval stages: implications for parasite biology and host adaptation.PLoS Negl Trop Dis2012
23002115The VPS33B-binding protein VPS16B is required in megakaryocyte and platelet α-granule biogenesis.Blood2012
23149485Integrated bioinformatic and targeted deletion analyses of the SRS gene superfamily identify SRS29C as a negative regulator of Toxoplasma virulence.mBio2012
22457617Comparative genomics of the apicomplexan parasites Toxoplasma gondii and Neospora caninum: Coccidia differing in host range and transmission strategy.PLoS Pathog2012
21550347NEMBASE4: the nematode transcriptome resource.Int J Parasitol2011
21908635Intergenic sequence comparison of Escherichia coli isolates reveals lifestyle adaptations but not host specificity.Appl Environ Microbiol2011
20164173Structural and functional characterization of SporoSAG: a SAG2-related surface antigen from Toxoplasma gondii.J Biol Chem2010
20513663DETECT--a density estimation tool for enzyme classification and its application to Plasmodium falciparum.Bioinformatics2010
19277570Obtaining accurate translations from expressed sequence tags.Methods Mol Biol2009
19953087Comparison of substrate specificity of the ubiquitin ligases Nedd4 and Nedd4-2 using proteome arrays.Mol Syst Biol2009
19363216The origins of apicomplexan sequence innovation.Genome Res2009
18430935Patterns of molecular evolution in Caenorhabditis preclude ancient origins of selfing.Genetics2008
18596977On the extent and origins of genic novelty in the phylum Nematoda.PLoS Negl Trop Dis2008
17551511Ubiquitination screen using protein microarrays for comprehensive identification of Rsp5 substrates in yeast.Mol Syst Biol2007
16936139The evolution of biased codon and amino acid usage in nematode genomes.Mol Biol Evol2006
14988115PartiGene--constructing partial genomes.Bioinformatics2004
15571632prot4EST: translating expressed sequence tags from neglected genomes.BMC Bioinformatics2004
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Collaborators

John Parkinson
The Hospital for Sick Children
Co-authored papers 12
Matthew Berriman
Wellcome Sanger Institute
Co-authored papers 5
Nancy Holroyd
Co-authored papers 2
Daniela Rotin
The Hospital for Sick Children
Co-authored papers 2
Christopher Fladd
Hospital for Sick Children
Co-authored papers 2
Asher D Cutter
Co-authored papers 2
Mona Loutfy
Co-authored papers 2
Gary Saunders
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 2
Jos?? M Peregr??n-Alvarez
Hospital for Sick Children
Co-authored papers 1
Ronish Gupta
McMaster University
Co-authored papers 1
Dhanasekaran Shanmugam
CSIR - National Chemical Laboratory
Co-authored papers 1
Nevan J Krogan (CM4AI)
University of California San Francisco
Co-authored papers 1
Alejandro Sanchez-Flores
Co-authored papers 1
Bart Kus
Hospital for Sick Children, University of Toronto
Co-authored papers 1
David S Roos
University of Pennsylvania
Co-authored papers 1
Brian P Brunk
University of Pennsylvania
Co-authored papers 1
Sachdev S Sidhu
School of Pharmacy, University of Waterloo
Co-authored papers 1
Magdalena Zarowiecki
European Bioinformatics Institute
Co-authored papers 1
Jeff Wintersinger
University of Toronto
Co-authored papers 1
Nicole L Washington
Renaissance Computing Institute, University of North Carolina
Co-authored papers 1
Martin Aslett
The Wellcome Trust Sanger Institute
Co-authored papers 1
Raffi Tonikian
Merck & Co., Inc.
Co-authored papers 1
Karol Estrada
Brandeis University
Co-authored papers 1
Xavier Soberón
Co-authored papers 1
Arnab Pain
King Abdullah University of Science and Technology
Co-authored papers 1
Release 1.2