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Author Details

Bruce Parrello
University of Chicago
2007
15
11
PMIDPaper TitleJournal TitlePublished Year
36350631Introducing the Bacterial and Viral Bioinformatics Resource Center (BV-BRC): a resource combining PATRIC, IRD and ViPR.Nucleic Acids Res2023
37314210Predicting variable gene content in <i>Escherichia coli</i> using conserved genes.mSystems2023
37435441Engineering of increased L-Threonine production in bacteria by combinatorial cloning and machine learning.Metab Eng Commun2023
33857229Supervised extraction of near-complete genomes from metagenomic samples: A new service in PATRIC.PLoS One2021
31667520The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities.Nucleic Acids Res2020
28968762PATRIC as a unique resource for studying antimicrobial resistance.Brief Bioinform2019
31581946A machine learning-based service for estimating quality of genomes using PATRIC.BMC Bioinformatics2019
29979655KBase: The United States Department of Energy Systems Biology Knowledgebase.Nat Biotechnol2018
27899627Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center.Nucleic Acids Res2017
27933038Computing and Applying Atomic Regulons to Understand Gene Expression and Regulation.Front Microbiol2016
25666585RASTtk: a modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes.Sci Rep2015
24293654The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST).Nucleic Acids Res2014
23110173SEED servers: high-performance access to the SEED genomes, annotations, and metabolic models.PLoS One2012
18261238The RAST Server: rapid annotations using subsystems technology.BMC Genomics2008
17145713The National Microbial Pathogen Database Resource (NMPDR): a genomics platform based on subsystem annotation.Nucleic Acids Res2007
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Collaborators

Robert Olson
University of Chicago
Co-authored papers 12
Rick Stevens
Argonne National Laboratory
Co-authored papers 11
Gary J Olsen
University of Illinois
Co-authored papers 10
Fangfang Xia
University of Chicago
Co-authored papers 9
James J Davis
University of Chicago
Co-authored papers 9
Thomas Brettin
University of Chicago
Co-authored papers 7
Maulik Shukla
University of Chicago
Co-authored papers 7
Robert A Edwards
Co-authored papers 5
Hyunseung Yoo
Translational Research Center, Inha University Hospital
Co-authored papers 5
Emily M Dietrich
University of Chicago
Co-authored papers 5
Neal Conrad
University of Chicago
Co-authored papers 5
Ronald W Kenyon
Co-authored papers 4
Aaron A Best
Hope College
Co-authored papers 4
Dan Murphy-Olson
Argonne National Laboratory
Co-authored papers 4
Christopher S Henry
Argonne National Laboratory
Co-authored papers 4
Folker Meyer
Institute for Artificial Intelligence, University of Duisburg-Essen
Co-authored papers 3
Matthew DeJongh
Hope College
Co-authored papers 3
Christopher Bun
Argonne National Laboratory
Co-authored papers 3
James Thomason
USDA-ARS Laboratory at Cold Spring Harbor Laboratory
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Andrei L Osterman
Sanford Burnham Prebys Medical Discovery Institute
Co-authored papers 2
Leslie K McNeil
Co-authored papers 2
Scott Devoid
Argonne National Laboratory
Co-authored papers 2
Jos?? P Faria
Argonne National Laboratory
Co-authored papers 2
Janaka N Edirisinghe
Computation Institute, University of Chicago
Co-authored papers 2
Nathan Tintle
The Fatty Acid Research Institute
Co-authored papers 2
Elizabeth M Glass
Argonne National Laboratory
Co-authored papers 2
Vivek Kumar
Co-authored papers 1
Dantong Yu
New Jersey Institute of Technology
Co-authored papers 1
Steven E Brenner
University of California berkeley
Co-authored papers 1
Sunita Kumari
Manav Rachna International Institute of Research and Studies
Co-authored papers 1
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