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Author Details

Ignacia Echeverria
University of California san francisco
2010
29
16
Kirsten Obernier (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
35298864Integrative structure determination of histones H3 and H4 using genetic interactions.FEBS J2023
37738970SARS-CoV-2 variants evolve convergent strategies to remodel the host response.Cell2023
37738963Implications of a multiscale structure of the yeast nuclear pore complex.Mol Cell2023
36754086The structural basis for HIV-1 Vif antagonism of human APOBEC3G.Nature2023
36782050Structure and dynamics of the essential endogenous mycobacterial polyketide synthase Pks13.Nat Struct Mol Biol2023
36747776Structure and dynamics of the essential endogenous mycobacterial polyketide synthase Pks13.bioRxiv2023
35013567From systems to structure - using genetic data to model protein structures.Nat Rev Genet2022
34982960Comprehensive structure and functional adaptations of the yeast nuclear pore complex.Cell2022
33166013Using Integrative Modeling Platform to compute, validate, and archive a model of a protein complex structure.Protein Sci2021
34821217Reversible phosphorylation of cyclin T1 promotes assembly and stability of P-TEFb.Elife2021
34389466Characterization of an A3G-Vif<sub>HIV-1</sub>-CRL5-CBFβ Structure Using a Cross-linking Mass Spectrometry Pipeline for Integrative Modeling of Host-Pathogen Complexes.Mol Cell Proteomics2021
32719457Structural basis of CD4 downregulation by HIV-1 Nef.Nat Struct Mol Biol2020
32034103Structural dynamics of the human COP9 signalosome revealed by cross-linking mass spectrometry and integrative modeling.Proc Natl Acad Sci U S A2020
33303586Genetic interaction mapping informs integrative structure determination of protein complexes.Science2020
31396911Modeling Biological Complexes Using Integrative Modeling Platform.Methods Mol Biol2019
29539637Integrative structure and functional anatomy of a nuclear pore complex.Nature2018
28591576Regulation of Rvb1/Rvb2 by a Domain within the INO80 Chromatin Remodeling Complex Implicates the Yeast Rvbs as Protein Assembly Chaperones.Cell Rep2017
27562170Na+ coordination at the Na2 site of the Na+/I- symporter.Proc Natl Acad Sci U S A2016
27731797Insights into HIV-1 proviral transcription from integrative structure and dynamics of the Tat:AFF4:P-TEFb:TAR complex.Elife2016
25675216DNA exit ramps are revealed in the binding landscapes obtained from simulations in helical coordinates.PLoS Comput Biol2015
26122737Oncogenic mutations weaken the interactions that stabilize the p110α-p85α heterodimer in phosphatidylinositol 3-kinase α.FEBS J2015
25905561The Acetylation Landscape of the H4 Histone Tail: Disentangling the Interplay between the Specific and Cumulative Effects.J Am Chem Soc2015
24844314Concerted dihedral rotations give rise to internal friction in unfolded proteins.J Am Chem Soc2014
25309634Activation of PI3Kα by physiological effectors and by oncogenic mutations: structural and dynamic effects.Biophys Rev2014
22849340Estimation of free-energy differences from computed work distributions: an application of Jarzynski's equality.J Phys Chem B2012
21539798Disaccharide binding to galectin-1: free energy calculations and molecular recognition mechanism.Biophys J2011
20014024Helix propensities calculations for amino acids in alanine based peptides using Jarzynski's equality.Proteins2010
20473772α-Helix peptides designed from EBV-gH protein display higher antigenicity and induction of monocyte apoptosis than the native peptide.Amino Acids2010
20884803Structural insights into maize viviparous14, a key enzyme in the biosynthesis of the phytohormone abscisic acid.Plant Cell2010
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Collaborators

Andrej Sali (CM4AI)
University of California San Francisco
Co-authored papers 16
Nevan J Krogan (CM4AI)
University of California San Francisco
Co-authored papers 8
Robyn M Kaake
J. David Gladstone Institutes
Co-authored papers 5
Ilan E Chemmama
University of California san francisco
Co-authored papers 4
Javier Fernandez-Martinez
The Rockefeller University
Co-authored papers 3
Ilona Nudelman
The Rockefeller University
Co-authored papers 3
Christopher W Akey
Boston University, Chobanian and Avedisian School of Medicine
Co-authored papers 3
Riccardo Pellarin
CNRS UMR 5086 and Universite Claude Bernard Lyon 1
Co-authored papers 3
Brian T Chait
The Rockefeller University
Co-authored papers 3
Junjie Wang
The Rockefeller University
Co-authored papers 3
Michael P Rout
The Rockefeller University
Co-authored papers 3
Hannes Braberg
University of California San Francisco
Co-authored papers 3
Daniel J Saltzberg
University of California san francisco
Co-authored papers 2
Nicholas M Chesarino
Fred Hutchinson Cancer Center
Co-authored papers 2
Charles H Greenberg
University of California San Francisco
Co-authored papers 2
Robert M Stroud
University of California San Francisco
Co-authored papers 2
Seung Joong Kim
Korea Advanced Institute of Science and Technology (KAIST)
Co-authored papers 2
Yifan Cheng
Quantitative Bioscience Institute, University of California san francisco
Co-authored papers 2
Clinton Yu
University of California Irvine
Co-authored papers 2
Miles Sasha Dickinson
University of Washington
Co-authored papers 2
Ziqiang Guan
Duke University Medical Center
Co-authored papers 2
Oren S Rosenberg
University of California san francisco
Co-authored papers 2
Jay R Unruh
Stowers Institute for Medical Research
Co-authored papers 2
Lan Huang
University of California Irvine
Co-authored papers 2
Benjamin Webb
University of California san francisco
Co-authored papers 2
Janet Finer-Moore
University of California San Francisco
Co-authored papers 2
Ruth H??ttenhain
Quantitative Biosciences Institute (QBI), University of California san francisco
Co-authored papers 2
Steven J Ludtke
Baylor College of Medicine
Co-authored papers 2
Jiewei Xu
Quantitative Biosciences Institute (QBI), University of California san francisco
Co-authored papers 2
Christna Ouch
Boston University School of Medicine, University of Massachusetts Medical School
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