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Author Details

Krzysztof Fidelis
University of California davis
1987
86
41
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37306011New prediction categories in CASP15.Proteins2023
37920879Critical assessment of methods of protein structure prediction (CASP)-Round XV.Proteins2023
37493353Protein target highlights in CASP15: Analysis of models by structure providers.Proteins2023
35547846Dual domain recognition determines SARS-CoV-2 PLpro selectivity for human ISG15 and K48-linked di-ubiquitin.bioRxiv2023
37185902Dual domain recognition determines SARS-CoV-2 PLpro selectivity for human ISG15 and K48-linked di-ubiquitin.Nat Commun2023
34890131Session introduction: AI-driven Advances in Modeling of Protein Structure.Pac Symp Biocomput2022
34559429Assessment of prediction methods for protein structures determined by NMR in CASP14: Impact of AlphaFold2.Proteins2021
34462960Modeling SARS-CoV-2 proteins in the CASP-commons experiment.Proteins2021
34561912Target highlights in CASP14: Analysis of models by structure providers.Proteins2021
34533838Critical assessment of methods of protein structure prediction (CASP)-Round XIV.Proteins2021
31977133Assessment of chemical-crosslink-assisted protein structure modeling in CASP13.Proteins2020
31569265Assessment of chemical-crosslink-assisted protein structure modeling in CASP13.Proteins2019
31589784Small angle X-ray scattering-assisted protein structure prediction in CASP13 and emergence of solution structure differences.Proteins2019
31589781Critical assessment of methods of protein structure prediction (CASP)-Round XIII.Proteins2019
31442339Target highlights in CASP13: Experimental target structures through the eyes of their authors.Proteins2019
31587357Assessing the accuracy of contact predictions in CASP13.Proteins2019
31603581Protein structure prediction assisted with sparse NMR data in CASP13.Proteins2019
28833563Assessment of model accuracy estimations in CASP12.Proteins2018
29082672Critical assessment of methods of protein structure prediction (CASP)-Round XII.Proteins2018
28960539Target highlights from the first post-PSI CASP experiment (CASP12, May-August 2016).Proteins2018
29067782A tribute to Anna Tramontano (1957-2017).Proteins2018
29314274Small angle X-ray scattering and cross-linking for data assisted protein structure prediction in CASP 12 with prospects for improved accuracy.Proteins2018
29159950Evaluation of the template-based modeling in CASP12.Proteins2018
26857434CASP11 statistics and the prediction center evaluation system.Proteins2016
26344049Methods of model accuracy estimation can help selecting the best models from decoy sets: Assessment of model accuracy estimations in CASP11.Proteins2016
26474083New encouraging developments in contact prediction: Assessment of the CASP11 results.Proteins2016
27171127Critical assessment of methods of protein structure prediction: Progress and new directions in round XI.Proteins2016
23780644Assessment of the assessment: evaluation of the model quality estimates in CASP10.Proteins2014
24344053Critical assessment of methods of protein structure prediction (CASP)--round x.Proteins2014
24038551CASP prediction center infrastructure and evaluation measures in CASP10 and CASP ROLL.Proteins2014
24150928CASP10 results compared to those of previous CASP experiments.Proteins2014
23946100Assessment of protein disorder region predictions in CASP10.Proteins2014
23760879Evaluation of residue-residue contact prediction in CASP10.Proteins2014
21928322Evaluation of residue-residue contact predictions in CASP9.Proteins2011
21997831Critical assessment of methods of protein structure prediction (CASP)--round IX.Proteins2011
21997643CASP9 results compared to those of previous CASP experiments.Proteins2011
21997462Evaluation of model quality predictions in CASP9.Proteins2011
21928402Evaluation of disorder predictions in CASP9.Proteins2011
19025980Local descriptors of protein structure: a systematic analysis of the sequence-structure relationship in proteins using short- and long-range interactions.Proteins2009
19603073A comprehensive analysis of the structure-function relationship in proteins based on local structure similarity.PLoS One2009
19731382Evaluation of template-based models in CASP8 with standard measures.Proteins2009
19722266CASP8 results in context of previous experiments.Proteins2009
19722263Protein structure prediction center in CASP8.Proteins2009
19774620Critical assessment of methods of protein structure prediction - Round VIII.Proteins2009
19100336Protein structure prediction and model quality assessment.Drug Discov Today2009
19289446Using multi-data hidden Markov models trained on local neighborhoods of protein structure to predict residue-residue contacts.Bioinformatics2009
19217386Outcome of a workshop on applications of protein models in biomedical research.Structure2009
18937438Interaction model based on local protein substructures generalizes to the entire structural enzyme-ligand space.J Chem Inf Model2008
17705273New tools and expanded data analysis capabilities at the Protein Structure Prediction Center.Proteins2007
17918729Critical assessment of methods of protein structure prediction-Round VII.Proteins2007
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Collaborators

Andriy Kryshtafovych
University of California davis
Co-authored papers 55
John Moult
Institute for Bioscience and Biotechnology Research
Co-authored papers 43
Anna Tramontano
Sapienza University of Rome
Co-authored papers 19
Torsten Schwede
University of Basel
Co-authored papers 18
Ceslovas Venclovas
Co-authored papers 12
Tim Hubbard
Co-authored papers 9
Andrzej Joachimiak
Center for Structural Biology of Infectious Diseases, University of Chicago
Co-authored papers 7
Burkhard Rost
Technical University of Munich (TUM)
Co-authored papers 6
Maya Topf
Leibniz-Institut fur Virologie (LIV)
Co-authored papers 6
Jan Komorowski
Co-authored papers 5
Andras Fiser
Albert Einstein College of Medicine
Co-authored papers 4
Gaetano T Montelione
Rensselaer Polytechnic Institute
Co-authored papers 4
John A Tainer
The University of Texas MD Anderson Cancer Center
Co-authored papers 3
Yuanpeng J Huang
Center for Advanced Biotechnology and Medicine, The State University of New Jersey
Co-authored papers 3
Sergei Grudinin
University Grenoble Alpes, CNRS
Co-authored papers 3
Jorge Eduardo Fajardo
Albert Einstein College of Medicine
Co-authored papers 3
Juri Rappsilber
Institute for Biotechnology, Technical University Berlin
Co-authored papers 3
Andrej Sali (CM4AI)
University of California San Francisco
Co-authored papers 2
Rhiju Das
Stanford University School of Medicine
Co-authored papers 2
Stephen H Bryant
National Center for Biotechnology Information
Co-authored papers 2
David Fushman
University of Maryland, College Park
Co-authored papers 2
Adam Liwo
Co-authored papers 2
Roland L Dunbrack
Fox Chase Cancer Center
Co-authored papers 2
Daniel D'Andrea
Nottingham Trent University
Co-authored papers 2
David Jones
The Francis Crick Institute
Co-authored papers 2
Agnieszka Karczyſska
Co-authored papers 2
Guillaume Pagès
Co-authored papers 2
Masayori Inouye
Robert Wood Johnson Medical School, Rutgers University
Co-authored papers 2
Stephen K Burley
The State University of New Jersey
Co-authored papers 2
Owen R Davies
Institute of Cell Biology, University of Edinburgh
Co-authored papers 2
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