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Author Details

Aim??e M Dudley
Pacific Northwest Research Institute
1994
41
21
Nevan J Krogan (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37146589The functional impact of 1,570 individual amino acid substitutions in human OTC.Am J Hum Genet2023
35581201Quantifying yeast colony morphologies with feature engineering from time-lapse photography.Sci Data2022
35706372A method for quantifying sporulation efficiency and isolating meiotic progeny in non-GMO strains of Saccharomyces cerevisiae.Yeast2022
33456446Exploiting the Autozygome to Support Previously Published Mendelian Gene-Disease Associations: An Update.Front Genet2020
32077105A yeast-based complementation assay elucidates the functional impact of 200 missense variants in human PSAT1.J Inherit Metab Dis2020
31109921Computational Inference Software for Tetrad Assembly from Randomly Arrayed Yeast Colonies.G3 (Bethesda)2019
31856706Data-driven multiscale modeling reveals the role of metabolic coupling for the spatio-temporal growth dynamics of yeast colonies.BMC Mol Cell Biol2019
30835725A polyploid admixed origin of beer yeasts derived from European and Asian wine populations.PLoS Biol2019
31091232Selection of Candida albicans trisomy during oropharyngeal infection results in a commensal-like phenotype.PLoS Genet2019
29138237Natural Variation in <i>SER1</i> and <i>ENA6</i> Underlie Condition-Specific Growth Defects in <i>Saccharomyces cerevisiae</i>.G3 (Bethesda)2018
29724862Rapid Phenotypic and Genotypic Diversification After Exposure to the Oral Host Niche in <i>Candida albicans</i>.Genetics2018
27836908Dissecting Gene Expression Changes Accompanying a Ploidy-Based Phenotypic Switch.G3 (Bethesda)2017
28125793The State of Systems Genetics in 2017.Cell Syst2017
28814445Meeting Report on Experimental Approaches to Evolution and Ecology Using Yeast and Other Model Systems.G3 (Bethesda)2017
28673928Transcriptional Profiling of Biofilm Regulators Identified by an Overexpression Screen in <i>Saccharomyces cerevisiae</i>.G3 (Bethesda)2017
27020745Independent Origins of Yeast Associated with Coffee and Cacao Fermentation.Curr Biol2016
25398792Allelic variation, aneuploidy, and nongenetic mechanisms suppress a monogenic trait in yeast.Genetics2015
26325142Aneuploidy: Tolerating Tolerance.Curr Biol2015
26392412Proteomic Analysis of Dhh1 Complexes Reveals a Role for Hsp40 Chaperone Ydj1 in Yeast P-Body Assembly.G3 (Bethesda)2015
25991822Parasexual Ploidy Reduction Drives Population Heterogeneity Through Random and Transient Aneuploidy in Candida albicans.Genetics2015
24447135Quantitative analysis of colony morphology in yeast.Biotechniques2014
24836713BEST: barcode enabled sequencing of tetrads.J Vis Exp2014
24918601Unidirectional P-body transport during the yeast cell cycle.PLoS One2014
24610064Identification and characterization of a drug-sensitive strain enables puromycin-based translational assays in Saccharomyces cerevisiae.Yeast2014
23812752Aneuploidy underlies a multicellular phenotypic switch.Proc Natl Acad Sci U S A2013
24365393POMO--Plotting Omics analysis results for Multiple Organisms.BMC Genomics2013
24122055Genomic sequence diversity and population structure of Saccharomyces cerevisiae assessed by RAD-seq.G3 (Bethesda)2013
23666411High-throughput tetrad analysis.Nat Methods2013
21350153Genetics. Systems genetics.Science2011
20465797Evaluation of methods for detection of fluorescence labeled subcellular objects in microscope images.BMC Bioinformatics2010
21090631Surface plasmon resonance biosensor for rapid label-free detection of microribonucleic acid at subfemtomole level.Anal Chem2010
19180192Learning a prior on regulatory potential from eQTL data.PLoS Genet2009
18808699Model-driven analysis of experimentally determined growth phenotypes for 465 yeast gene deletion mutants under 16 different conditions.Genome Biol2008
16968785Identifying regulatory mechanisms using individual variation reveals key role for chromatin modification.Proc Natl Acad Sci U S A2006
16729036A global view of pleiotropy and phenotypically derived gene function in yeast.Mol Syst Biol2005
12855456Predicting phenotype from patterns of annotation.Bioinformatics2003
12032321Measuring absolute expression with microarrays with a calibrated reference sample and an extended signal intensity range.Proc Natl Acad Sci U S A2002
10580001The Spt components of SAGA facilitate TBP binding to a promoter at a post-activator-binding step in vivo.Genes Dev1999
10101163Specific components of the SAGA complex are required for Gcn4- and Gcr1-mediated activation of the his4-912delta promoter in Saccharomyces cerevisiae.Genetics1999
9528759Identification and analysis of Mot3, a zinc finger protein that binds to the retrotransposon Ty long terminal repeat (delta) in Saccharomyces cerevisiae.Mol Cell Biol1998
8007968T7 RNA polymerase-dependent expression of COXII in yeast mitochondria.Mol Cell Biol1994
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Collaborators

George M Church
Harvard Medical School
Co-authored papers 5
Pekka Ruusuvuori
Institute of Biomedicine, University of Turku
Co-authored papers 3
Su-In Lee
University of Washington
Co-authored papers 2
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Co-authored papers 2
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University of California berkeley
Co-authored papers 2
Dana Pe'er
Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center
Co-authored papers 2
Ilya Shmulevich
Institute for Systems Biology
Co-authored papers 2
Joseph H Nadeau
Co-authored papers 2
Daphne Koller
Stanford University
Co-authored papers 2
Lucas Pelkmans
University of Zurich
Co-authored papers 1
Ron Shamir
Tel Aviv University
Co-authored papers 1
David G Drubin
University of California berkeley
Co-authored papers 1
Mashael Alqahtani
Department of Basic and Clinical Oral Sciences, Umm Al-Qura University
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Richard Kreisberg
Co-authored papers 1
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Lars M Steinmetz
Stanford University
Co-authored papers 1
Ghada M H Abdel-Salam
Human Genetics and Genome Research Institute, National Research Centre
Co-authored papers 1
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University of California San Francisco
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Allan I Levey
Emory University School of Medicine
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Institute for Systems Biology
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German Cancer Research Center (DKFZ) and Heidelberg University
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Charles R Farber
University of Virginia
Co-authored papers 1
Marcus B Noyes
Co-authored papers 1
Amos Tanay
Weizmann Institute of Science
Co-authored papers 1
Jef D Boeke
Institute for Systems Genetics, NYU School of Medicine
Co-authored papers 1
Fowzan S Alkuraya
King Faisal Specialist Hospital and Research Center
Co-authored papers 1
David R Goodlett
University of Victoria
Co-authored papers 1
Hiroki Morizono
Co-authored papers 1
Aldons J Lusis
Co-authored papers 1
Frederick P Roth
University of Toronto
Co-authored papers 1
Release 1.2