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Author Details

Rongxin Fang
Ludwig Institute for Cancer Research, University of California San Diego
2015
26
19
PMIDPaper TitleJournal TitlePublished Year
37155843Integrated analysis of single-cell chromatin state and transcriptome identified common vulnerability despite glioblastoma heterogeneity.Proc Natl Acad Sci U S A2023
37155843Integrated analysis of single-cell chromatin state and transcriptome identified common vulnerability despite glioblastoma heterogeneity.Proc Natl Acad Sci U S A2023
37390046A guide to the BRAIN Initiative Cell Census Network data ecosystem.PLoS Biol2023
37390046A guide to the BRAIN Initiative Cell Census Network data ecosystem.PLoS Biol2023
35319013Author Correction: Comparative cellular analysis of motor cortex in human, marmoset and mouse.Nature2022
35771910Conservation and divergence of cortical cell organization in human and mouse revealed by MERFISH.Science2022
35419551Single nucleus multi-omics identifies human cortical cell regulatory genome diversity.Cell Genom2022
35319013Author Correction: Comparative cellular analysis of motor cortex in human, marmoset and mouse.Nature2022
35771910Conservation and divergence of cortical cell organization in human and mouse revealed by MERFISH.Science2022
35419551Single nucleus multi-omics identifies human cortical cell regulatory genome diversity.Cell Genom2022
33361815Chromothripsis drives the evolution of gene amplification in cancer.Nature2021
33637727Comprehensive analysis of single cell ATAC-seq data with SnapATAC.Nat Commun2021
33795864Single-cell chromatin accessibility identifies pancreatic islet cell type- and state-specific regulatory programs of diabetes risk.Nat Genet2021
33649505Publisher Correction: Chromothripsis drives the evolution of gene amplification in cancer.Nature2021
33361815Chromothripsis drives the evolution of gene amplification in cancer.Nature2021
34616068An atlas of gene regulatory elements in adult mouse cerebrum.Nature2021
34616066A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex.Nature2021
34616062Comparative cellular analysis of motor cortex in human, marmoset and mouse.Nature2021
34446921SnapHiC: a computational pipeline to identify chromatin loops from single-cell Hi-C data.Nat Methods2021
33795864Single-cell chromatin accessibility identifies pancreatic islet cell type- and state-specific regulatory programs of diabetes risk.Nat Genet2021
33649505Publisher Correction: Chromothripsis drives the evolution of gene amplification in cancer.Nature2021
33637727Comprehensive analysis of single cell ATAC-seq data with SnapATAC.Nat Commun2021
34616068An atlas of gene regulatory elements in adult mouse cerebrum.Nature2021
34616066A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex.Nature2021
34616062Comparative cellular analysis of motor cortex in human, marmoset and mouse.Nature2021
34446921SnapHiC: a computational pipeline to identify chromatin loops from single-cell Hi-C data.Nat Methods2021
32728242Spatiotemporal DNA methylome dynamics of the developing mouse fetus.Nature2020
32728242Spatiotemporal DNA methylome dynamics of the developing mouse fetus.Nature2020
30612940Hyper-Editing of Cell-Cycle Regulatory and Tumor Suppressor RNA Promotes Malignant Progenitor Propagation.Cancer Cell2019
30612940Hyper-Editing of Cell-Cycle Regulatory and Tumor Suppressor RNA Promotes Malignant Progenitor Propagation.Cancer Cell2019
30986246MAPS: Model-based analysis of long-range chromatin interactions from PLAC-seq and HiChIP experiments.PLoS Comput Biol2019
31427791Transcriptionally active HERV-H retrotransposons demarcate topologically associating domains in human pluripotent stem cells.Nat Genet2019
31384045Joint profiling of DNA methylation and chromatin architecture in single cells.Nat Methods2019
31384045Joint profiling of DNA methylation and chromatin architecture in single cells.Nat Methods2019
31427791Transcriptionally active HERV-H retrotransposons demarcate topologically associating domains in human pluripotent stem cells.Nat Genet2019
30986246MAPS: Model-based analysis of long-range chromatin interactions from PLAC-seq and HiChIP experiments.PLoS Comput Biol2019
29434377Single-nucleus analysis of accessible chromatin in developing mouse forebrain reveals cell-type-specific transcriptional regulation.Nat Neurosci2018
29434377Single-nucleus analysis of accessible chromatin in developing mouse forebrain reveals cell-type-specific transcriptional regulation.Nat Neurosci2018
29497140Author Correction: Single-nucleus analysis of accessible chromatin in developing mouse forebrain reveals cell-type-specific transcriptional regulation.Nat Neurosci2018
29779944Analysis of Genetically Diverse Macrophages Reveals Local and Domain-wide Mechanisms that Control Transcription Factor Binding and Function.Cell2018
29779944Analysis of Genetically Diverse Macrophages Reveals Local and Domain-wide Mechanisms that Control Transcription Factor Binding and Function.Cell2018
29497140Author Correction: Single-nucleus analysis of accessible chromatin in developing mouse forebrain reveals cell-type-specific transcriptional regulation.Nat Neurosci2018
28417999A tiling-deletion-based genetic screen for cis-regulatory element identification in mammalian cells.Nat Methods2017
28417999A tiling-deletion-based genetic screen for cis-regulatory element identification in mammalian cells.Nat Methods2017
27187392Assessment of Aliasing Errors in Low-Degree Coefficients Inferred from GPS Data.Sensors (Basel)2016
27187392Assessment of Aliasing Errors in Low-Degree Coefficients Inferred from GPS Data.Sensors (Basel)2016
27999384BDS Precise Point Positioning for Seismic Displacements Monitoring: Benefit from the High-Rate Satellite Clock Corrections.Sensors (Basel)2016
27886167Mapping of long-range chromatin interactions by proximity ligation-assisted ChIP-seq.Cell Res2016
27886167Mapping of long-range chromatin interactions by proximity ligation-assisted ChIP-seq.Cell Res2016
27999384BDS Precise Point Positioning for Seismic Displacements Monitoring: Benefit from the High-Rate Satellite Clock Corrections.Sensors (Basel)2016
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Collaborators

Bing Ren
Center for Epigenomics, University of California San Diego
Co-authored papers 21
Sebastian Preissl
Center for Epigenomics, University of California San Diego
Co-authored papers 10
Joseph R Ecker
The Salk Institute for Biological Studies
Co-authored papers 8
Miao Yu
Co-authored papers 7
Eran A Mukamel
University of California San Diego
Co-authored papers 7
Yanxiao Zhang
Co-authored papers 7
Fangming Xie
University of California Los Angeles
Co-authored papers 6
David U Gorkin
Center for Epigenomics, University of California San Diego
Co-authored papers 5
Yunjiang Qiu
Ludwig Institute for Cancer Research, University of California
Co-authored papers 5
Ed S Lein
Allen Institute for Brain Science
Co-authored papers 5
Hui Huang
Co-authored papers 5
Joseph R Nery
The Salk Institute for Biological Studies
Co-authored papers 5
Yuan Zhao
Co-authored papers 4
Brian R Herb
Institute for Genome Sciences, University of Maryland School of Medicine
Co-authored papers 4
Aviv Regev
Broad Institute of MIT and Harvard
Co-authored papers 4
Kun Zhang
China Pharmaceutical University
Co-authored papers 4
Owen White
Institute for Genome Sciences, University of Maryland School of Medicine
Co-authored papers 4
Jesse Gillis
Stanley Institute for Cognitive Genomics
Co-authored papers 4
Seth A Ament
Institute for Genome Sciences, University of Maryland School of Medicine
Co-authored papers 4
Hongkui Zeng
Allen Institute for Brain Science
Co-authored papers 4
Zizhen Yao
Allen Institute for Brain Science
Co-authored papers 4
Joshua Orvis
Institute for Genome Sciences, University of Maryland School of Medicine
Co-authored papers 4
Ronna Hertzano
University of Maryland School of Medicine
Co-authored papers 4
Michael Hawrylycz
Allen Institute for Brain Science
Co-authored papers 4
Len A Pennacchio
Lawrence Berkeley National Laboratory
Co-authored papers 3
Song-Lin Ding
Allen Institute for Brain Science
Co-authored papers 3
Evan Z Macosko
Co-authored papers 3
Diane E Dickel
Co-authored papers 3
Richard H Scheuermann
J. Craig Venter Institute
Co-authored papers 3
Stephan Fischer
Institut Pasteur, Universite Paris Cite
Co-authored papers 3
Release 1.2