Author details

Full Name

Dmitri Papatsenko

Affiliation

ORCID

Career Start Year

1994

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36206733	Analysis of Transcriptional Variability in a Large Human iPSC Library Reveals Genetic and Non-genetic Determinants of Heterogeneity.	Cell Stem Cell	2022
35587924	Transcriptome analysis reveals high tumor heterogeneity with respect to re-activation of stemness and proliferation programs.	PLoS ONE	2022
33816475	An Esrrb and Nanog Cell Fate Regulatory Module Controlled by Feed Forward Loop Interactions.	Front Cell Dev Biol	2021
34107262	Enhanced C/EBP binding to GÂ·T mismatches facilitates fixation of CpG mutations in cancer and adult stem cells.	Cell Rep	2021
34260924	Enhanced C/EBP binding to GÂ·T mismatches facilitates fixation of CpG mutations in cancer and adult stem cells.	Cell Rep	2021
32109377	Restraining Lysosomal Activity Preserves Hematopoietic Stem Cell Quiescence and Potency.	Cell Stem Cell	2020
32243840	Memory of Divisional History Directs the Continuous Process of Primitive Hematopoietic Lineage Commitment.	Stem Cell Reports	2020
29727814	Feedback control of pluripotency in embryonic stem cells: Signaling, transcription and epigenetics.	Stem Cell Research	2018
30530727	Direct reprogramming of fibroblasts into antigen-presenting dendritic cells.	Science immunology	2018
30517869	Cooperative Transcription Factor Induction Mediates Hemogenic Reprogramming.	Cell Rep	2018
29140464	HOCOMOCO: towards a complete collection of transcription factor binding models for human and mouse via large-scale ChIP-Seq analysis.	Nucleic Acids Res	2018
28017796	Analysis of Transcriptional Variability in a Large Human iPSC Library Reveals Genetic and Non-genetic Determinants of Heterogeneity.	Cell Stem Cell	2017
28348206	High-throughput identification of small molecules that affect human embryonic vascular development.	Proceedings of the National Academy of Sciences of the United States of America	2017
26954547	Hematopoietic Reprogramming In Vitro Informs In Vivo Identification of Hemogenic Precursors to Definitive Hematopoietic Stem Cells.	Developmental Cell	2016
26970649	Emerging Modeling Concepts and Solutions in Stem Cell Research.	Current Topics in Developmental Biology	2016
26452208	A Systems Approach Identifies Essential FOXO3 Functions at Key Steps of Terminal Erythropoiesis.	PLoS Genet	2015
25860607	Modeling familial cancer with induced pluripotent stem cells.	Cell	2015
25936917	Tex10 Coordinates Epigenetic Control of Super-Enhancer Activity in Pluripotency and Reprogramming.		2015
25637559	NetExplore: a web server for modeling small network motifs.		2015
26095607	Tbx3 Controls Dppa3 Levels and Exit from Pluripotency toward Mesoderm.	Stem Cell Reports	2015
26267829	Single-Cell Analyses of ESCs Reveal Alternative Pluripotent Cell States and Molecular Mechanisms that Control Self-Renewal.	Stem Cell Reports	2015
24966026	FOXO3-mTOR metabolic cooperation in the regulation of erythroid cell maturation and homeostasis.	American Journal of Hematology	2014
24022884	Expression of podocalyxin separates the hematopoietic and vascular potentials of mouse embryonic stem cell-derived mesoderm.	Stem Cells	2014
24749072	Divisional history and hematopoietic stem cell function during homeostasis.	Stem Cell Reports	2014
23770078	Induction of a hemogenic program in mouse fibroblasts.	Cell Stem Cell	2013
23822503	Context-dependent transcriptional interpretation of mitogen activated protein kinase signaling in the Drosophila embryo.	Chaos	2013
21747931	The Drosophila gap gene network is composed of two parallel toggle switches.	PLoS ONE	2011
21283609	Clusters of temporal discordances reveal distinct embryonic patterning mechanisms in Drosophila and anopheles.	PLoS Biology	2011
20819957	Temporal waves of coherent gene expression during Drosophila embryogenesis.		2010
19857268	Time warping of evolutionary distant temporal gene expression data based on noise suppression.	BMC Bioinformatics	2009
19795410	Stripe formation in the early fly embryo: principles, models, and networks.	BioEssays	2009
19651877	Organization of developmental enhancers in the Drosophila embryo.	Nucleic Acids Research	2009
18287046	Dual regulation by the Hunchback gradient in the Drosophila embryo.	Proceedings of the National Academy of Sciences of the United States of America	2008
19104040	How the Dorsal gradient works: insights from postgenome technologies.	Proceedings of the National Academy of Sciences of the United States of America	2008
18029246	A rationale for the enhanceosome and other evolutionarily constrained enhancers.	Current Biology	2007
17500585	Enhancer responses to similarly distributed antagonistic gradients in development.	PLoS Computational Biology	2007
17308342	ClusterDraw web server: a tool to identify and visualize clusters of binding motifs for transcription factors.		2007
16750631	Computational models for neurogenic gene expression in the Drosophila embryo.	Current Biology	2006
17141163	Evolution of the ventral midline in insect embryos.	Developmental Cell	2006
16697139	Conservation patterns in different functional sequence categories of divergent Drosophila species.	Genomics	2006
16403795	Short fuzzy tandem repeats in genomic sequences, identification, and possible role in regulation of gene expression.	Bioinformatics	2006
16170869	Computational identification of regulatory DNAs underlying animal development.	Nature Methods	2005
15795372	Quantitative analysis of binding motifs mediating diverse spatial readouts of the Dorsal gradient in the Drosophila embryo.	Proceedings of the National Academy of Sciences of the United States of America	2005
15793007	The role of binding site cluster strength in Bicoid-dependent patterning in Drosophila.	Proceedings of the National Academy of Sciences of the United States of America	2005
14685241	A self-organizing system of repressor gradients establishes segmental complexity in Drosophila.	Nature	2003
14530449	Distance preferences in the arrangement of binding motifs and hierarchical levels in organization of transcription regulatory information.	Nucleic Acids Res	2003
12670999	Homotypic regulatory clusters in Drosophila.	Genome Res	2003
12791270	Distinction between color photoreceptor cell fates is controlled by Prospero in Drosophila.	Dev Cell	2003
12967559	Otd/Crx, a dual regulator for the specification of ommatidia subtypes in the Drosophila retina.	Dev Cell	2003
14690551	Statistical extraction of Drosophila cis-regulatory modules using exhaustive assessment of local word frequency.	BMC Bioinformatics	2003