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Author Details

Matthew E Monroe
Pacific Northwest National Laboratory
2004
142
47
PMIDPaper TitleJournal TitlePublished Year
36631391TopPICR: A Companion R Package for Top-Down Proteomics Data Analysis.J Proteome Res2023
37647397Human cerebrospinal fluid contains diverse lipoprotein subspecies enriched in proteins implicated in central nervous system health.Sci Adv2023
38076956Long-read RNA-seq atlas of novel microglia isoforms elucidates disease-associated genetic regulation of splicing.medRxiv2023
36631391TopPICR: A Companion R Package for Top-Down Proteomics Data Analysis.J Proteome Res2023
38076956Long-read RNA-seq atlas of novel microglia isoforms elucidates disease-associated genetic regulation of splicing.medRxiv2023
37647397Human cerebrospinal fluid contains diverse lipoprotein subspecies enriched in proteins implicated in central nervous system health.Sci Adv2023
34113365New Insights Into Lignification via Network and Multi-Omics Analyses of Arogenate Dehydratase Knock-Out Mutants in <i>Arabidopsis thaliana</i>.Front Plant Sci2021
34113365New Insights Into Lignification via Network and Multi-Omics Analyses of Arogenate Dehydratase Knock-Out Mutants in <i>Arabidopsis thaliana</i>.Front Plant Sci2021
33577785Proteogenomic and metabolomic characterization of human glioblastoma.Cancer Cell2021
33883556A resource of lipidomics and metabolomics data from individuals with undiagnosed diseases.Sci Data2021
33666432Dynamic Time-Warping Correction for Shifts in Ultrahigh Resolving Power Ion Mobility Spectrometry and Structures for Lossless Ion Manipulations.J Am Soc Mass Spectrom2021
34425387Mass spectrometry-based direct detection of multiple types of protein thiol modifications in pancreatic beta cells under endoplasmic reticulum stress.Redox Biol2021
33883556A resource of lipidomics and metabolomics data from individuals with undiagnosed diseases.Sci Data2021
33666432Dynamic Time-Warping Correction for Shifts in Ultrahigh Resolving Power Ion Mobility Spectrometry and Structures for Lossless Ion Manipulations.J Am Soc Mass Spectrom2021
33577785Proteogenomic and metabolomic characterization of human glioblastoma.Cancer Cell2021
34425387Mass spectrometry-based direct detection of multiple types of protein thiol modifications in pancreatic beta cells under endoplasmic reticulum stress.Redox Biol2021
32407631Block Design with Common Reference Samples Enables Robust Large-Scale Label-Free Quantitative Proteome Profiling.J Proteome Res2020
32407631Block Design with Common Reference Samples Enables Robust Large-Scale Label-Free Quantitative Proteome Profiling.J Proteome Res2020
32175737Accurate Identification of Deamidation and Citrullination from Global Shotgun Proteomics Data Using a Dual-Search Delta Score Strategy.J Proteome Res2020
32529193Proteogenomic Characterization of Ovarian HGSC Implicates Mitotic Kinases, Replication Stress in Observed Chromosomal Instability.Cell Rep Med2020
32966491Unveiling molecular signatures of preeclampsia and gestational diabetes mellitus with multi-omics and innovative cheminformatics visualization tools.Mol Omics2020
32954372Correction: Proteogenomic Characterization of Ovarian HGSC Implicates Mitotic Kinases, Replication Stress in Observed Chromosomal Instability.Cell Rep Med2020
33396843From Prevention to Disease Perturbations: A Multi-Omic Assessment of Exercise and Myocardial Infarctions.Biomolecules2020
33396843From Prevention to Disease Perturbations: A Multi-Omic Assessment of Exercise and Myocardial Infarctions.Biomolecules2020
32966491Unveiling molecular signatures of preeclampsia and gestational diabetes mellitus with multi-omics and innovative cheminformatics visualization tools.Mol Omics2020
32954372Correction: Proteogenomic Characterization of Ovarian HGSC Implicates Mitotic Kinases, Replication Stress in Observed Chromosomal Instability.Cell Rep Med2020
32529193Proteogenomic Characterization of Ovarian HGSC Implicates Mitotic Kinases, Replication Stress in Observed Chromosomal Instability.Cell Rep Med2020
32175737Accurate Identification of Deamidation and Citrullination from Global Shotgun Proteomics Data Using a Dual-Search Delta Score Strategy.J Proteome Res2020
30977807Lipid Mini-On: mining and ontology tool for enrichment analysis of lipidomic data.Bioinformatics2019
30977807Lipid Mini-On: mining and ontology tool for enrichment analysis of lipidomic data.Bioinformatics2019
31450886SLIM Ultrahigh Resolution Ion Mobility Spectrometry Separations of Isotopologues and Isotopomers Reveal Mobility Shifts due to Mass Distribution Changes.Anal Chem2019
31450886SLIM Ultrahigh Resolution Ion Mobility Spectrometry Separations of Isotopologues and Isotopomers Reveal Mobility Shifts due to Mass Distribution Changes.Anal Chem2019
29339515MERS-CoV and H5N1 influenza virus antagonize antigen presentation by altering the epigenetic landscape.Proc Natl Acad Sci U S A2018
29988108Reproducible workflow for multiplexed deep-scale proteome and phosphoproteome analysis of tumor tissues by liquid chromatography-mass spectrometry.Nat Protoc2018
29666158Quality Control Analysis in Real-time (QC-ART): A Tool for Real-time Quality Control Assessment of Mass Spectrometry-based Proteomics Data.Mol Cell Proteomics2018
29706793An algorithm to correct saturated mass spectrometry ion abundances for enhanced quantitation and mass accuracy in omic studies.Int J Mass Spectrom2018
29339515MERS-CoV and H5N1 influenza virus antagonize antigen presentation by altering the epigenetic landscape.Proc Natl Acad Sci U S A2018
29161511A Customizable Flow Injection System for Automated, High Throughput, and Time Sensitive Ion Mobility Spectrometry and Mass Spectrometry Measurements.Anal Chem2018
29988108Reproducible workflow for multiplexed deep-scale proteome and phosphoproteome analysis of tumor tissues by liquid chromatography-mass spectrometry.Nat Protoc2018
29666158Quality Control Analysis in Real-time (QC-ART): A Tool for Real-time Quality Control Assessment of Mass Spectrometry-based Proteomics Data.Mol Cell Proteomics2018
29706793An algorithm to correct saturated mass spectrometry ion abundances for enhanced quantitation and mass accuracy in omic studies.Int J Mass Spectrom2018
29161511A Customizable Flow Injection System for Automated, High Throughput, and Time Sensitive Ion Mobility Spectrometry and Mass Spectrometry Measurements.Anal Chem2018
27958645Comparing identified and statistically significant lipids and polar metabolites in 15-year old serum and dried blood spot samples for longitudinal studies.Rapid Commun Mass Spectrom2017
28505286PIXiE: an algorithm for automated ion mobility arrival time extraction and collision cross section calculation using global data association.Bioinformatics2017
28657654Quantitative proteomics identifies altered O-GlcNAcylation of structural, synaptic and memory-associated proteins in Alzheimer's disease.J Pathol2017
29154144Multi-platform 'Omics Analysis of Human Ebola Virus Disease Pathogenesis.Cell Host Microbe2017
28301728Coupling Front-End Separations, Ion Mobility Spectrometry, and Mass Spectrometry For Enhanced Multidimensional Biological and Environmental Analyses.Annu Rev Anal Chem (Palo Alto Calif)2017
27958645Comparing identified and statistically significant lipids and polar metabolites in 15-year old serum and dried blood spot samples for longitudinal studies.Rapid Commun Mass Spectrom2017
28301728Coupling Front-End Separations, Ion Mobility Spectrometry, and Mass Spectrometry For Enhanced Multidimensional Biological and Environmental Analyses.Annu Rev Anal Chem (Palo Alto Calif)2017
29154144Multi-platform 'Omics Analysis of Human Ebola Virus Disease Pathogenesis.Cell Host Microbe2017
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Collaborators

Pacific Northwest National Laboratory
Co-authored papers 121
Co-authored papers 51
Co-authored papers 42
Co-authored papers 33
Pacific Northwest National Laboratory
Co-authored papers 31
Co-authored papers 30
Pacific Northwest National Laboratory
Co-authored papers 29
Pacific Northwest National Laboratory
Co-authored papers 26
Co-authored papers 26
Pacific Northwest National Laboratory
Co-authored papers 22
North Carolina State University
Co-authored papers 20
Pacific Northwest National Laboratory
Co-authored papers 19
Brigham Young University
Co-authored papers 19
Pacific Northwest National Laboratory
Co-authored papers 19
Howard Hughes Medical Institute, University of California San Diego
Co-authored papers 18
Co-authored papers 16
Pacific Northwest National Laboratory
Co-authored papers 16
Pacific Northwest National Laboratory
Co-authored papers 16
Pacific Northwest National Laboratory
Co-authored papers 15
Pacific Northwest National Laboratory
Co-authored papers 14
Co-authored papers 13
Pacific Northwest National Laboratory
Co-authored papers 13
Pacific Northwest National Laboratory
Co-authored papers 12
Pacific Northwest National Laboratory
Co-authored papers 10
Oregon Health and Science University
Co-authored papers 9
Co-authored papers 9
Pacific Northwest National Laboratory
Co-authored papers 8
Pacific Northwest National Laboratory
Co-authored papers 8
Pacific Northwest National Laboratory
Co-authored papers 8
Pacific Northwest National Laboratory
Co-authored papers 8