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Author Details

Jeffrey A Thompson
University of Kansas Medical Center
2013
35
8
PMIDPaper TitleJournal TitlePublished Year
37415126AMEND: active module identification using experimental data and network diffusion.BMC Bioinformatics2023
34648941Estimating power for clinical trials with Patient Reported Outcomes - using Item Response Theory.J Clin Epidemiol2022
35651355Rural-Urban Disparities in Health Access Factors Over Time: Implications for Cancer Prevention and Health Equity in the Midwest.Health Equity2022
35419567A Novel Framework for the Identification of Reference DNA Methylation Libraries for Reference-Based Deconvolution of Cellular Mixtures.Front Bioinform2022
35750406Corrigendum to 'Estimating Power for Clinical Trials with Patient Reported Outcomes - using Item Response Theory' [Journal of Clinical Epidemiology volume (2022) 141-148/141].J Clin Epidemiol2022
36506825Bolstering the complex study start-up process at NCI cancer centers using technology.Contemp Clin Trials Commun2022
36215429<i>pwrBRIDGE</i>: a user-friendly web application for power and sample size estimation in batch-confounded microarray studies with dependent samples.Stat Appl Genet Mol Biol2022
36304274Assessing equivalent and inverse change in genes between diverse experiments.Front Bioinform2022
35095270Accelerating Cancer Patient Recruitment Through a Mobile Application (Clinical Trial Finder).Cancer Inform2022
34714554Mouse-INtraDuctal (MIND): an in vivo model for studying the underlying mechanisms of DCIS malignancy.J Pathol2022
34027224Non-cancer clinical trials start-up metrics at an academic medical center: Implications for advancing research.Contemp Clin Trials Commun2021
34905304Batch effect reduction of microarray data with dependent samples using an empirical Bayes approach (BRIDGE).Stat Appl Genet Mol Biol2021
34819024The need to study rural cancer outcome disparities at the local level: a retrospective cohort study in Kansas and Missouri.BMC Public Health2021
34168953A framework for personalized mammogram screening.Prev Med Rep2021
32510004Improving the efficiency of clinical trials by standardizing processes for Investigator Initiated Trials.Contemp Clin Trials Commun2020
34752537Utilization of Technology to Improve Efficiency in Investigational Drug Management Processes.J Pharm Technol2020
31797615Improving survival prediction using a novel feature selection and feature reduction framework based on the integration of clinical and molecular data.Pac Symp Biocomput2020
32093613Equivalent change enrichment analysis: assessing equivalent and inverse change in biological pathways between diverse experiments.BMC Genomics2020
33285636OGA Inhibition Alters Energetics and Nutrient Sensing in Alzheimer's Disease Cytoplasmic Hybrids.J Alzheimers Dis2020
33148085Publications search optimization: Comparison of a homegrown-API approach versus manual publication searches at an NCI designated cancer center.Health Informatics J2020
32352029BCL9/STAT3 regulation of transcriptional enhancer networks promote DCIS progression.NPJ Breast Cancer2020
31035919pwrEWAS: a user-friendly tool for comprehensive power estimation for epigenome wide association studies (EWAS).BMC Bioinformatics2019
33842930Case Study: Electronic Data Capture System Validation at an Academic Institution.Data Basics2019
31702998A Bayesian framework for identifying consistent patterns of microbial abundance between body sites.Stat Appl Genet Mol Biol2019
31798300Optimizing Retrieval of Biospecimens Using the Curated Cancer Clinical Outcomes Database (C3OD).Cancer Inform2019
31239489Relevant Word Order Vectorization for Improved Natural Language Processing in Electronic Health Records.Sci Rep2019
31519190Perception, knowledge, and interest of urologic surgery: a medical student survey.BMC Med Educ2019
29581450Methylation-to-Expression Feature Models of Breast Cancer Accurately Predict Overall Survival, Distant-Recurrence Free Survival, and Pathologic Complete Response in Multiple Cohorts.Sci Rep2018
30081598Pan-Cancer Analysis Reveals Differential Susceptibility of Bidirectional Gene Promoters to DNA Methylation, Somatic Mutations, and Copy Number Alterations.Int J Mol Sci2018
30237786Real Talk: The Inter-play Between the mTOR, AMPK, and Hexosamine Biosynthetic Pathways in Cell Signaling.Front Endocrinol (Lausanne)2018
30474074A Curated Cancer Clinical Outcomes Database (C3OD) for accelerating patient recruitment in cancer clinical trials.JAMIA Open2018
27897002A METHYLATION-TO-EXPRESSION FEATURE MODEL FOR GENERATING ACCURATE PROGNOSTIC RISK SCORES AND IDENTIFYING DISEASE TARGETS IN CLEAR CELL KIDNEY CANCER.Pac Symp Biocomput2017
26844019Cross-platform normalization of microarray and RNA-seq data for machine learning applications.PeerJ2016
24600468Common features of microRNA target prediction tools.Front Genet2014
31008453An Exploration Into Improving DNA Motif Inference by Looking for Highly Conserved Core Regions.IEEE Symp Comput Intell Bioinforma Comput Biol Proc2013
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Collaborators

Matthew S Mayo
The University of Kansas Medical Center
Co-authored papers 11
Susan G Hilsenbeck
Co-authored papers 2
Ossama Tawfik
University of Kansas
Co-authored papers 2
Brock C Christensen
Geisel School of Medicine, Dartmouth College
Co-authored papers 2
Jianghua He
Co-authored papers 2
Jianhua Zhang
University of Texas MD Anderson Cancer Center
Co-authored papers 1
Lucas A Salas
Geisel School of Medicine, Dartmouth College
Co-authored papers 1
Karl T Kelsey
Brown School of Public Health
Co-authored papers 1
Casey S Greene
Co-authored papers 1
Casey S Greene
Dartmouth College Geisel School of Medicine, Princeton University, University of Colorado Anschutz Medical Campus, University of Pennsylvania Perelman School of Medicine
Co-authored papers 1
Phillip A Futreal
The University of Texas MD Anderson Cancer Center
Co-authored papers 1
Tara L Lin
University of Kansas Medical Center
Co-authored papers 1
Jie Tan
College of Engineering and Center for Quantitative Biology, Peking University
Co-authored papers 1
Brooke L Fridley
H. Lee Moffitt Cancer Center and Research Institute
Co-authored papers 1
Russell H Swerdlow
University of Kansas Alzheimer's Disease Research Centre
Co-authored papers 1
Release 1.2