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Author Details

Michael A Fischbach
Stanford University
2003
133
70
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36782070gutSMASH predicts specialized primary metabolic pathways from the human gut microbiota.Nat Biotechnol2023
37662338Identification of human skin microbiome odorants that manipulate mosquito landing behavior.bioRxiv2023
37587342Mapping the T cell repertoire to a complex gut bacterial community.Nature2023
37947418Microbe-derived uremic solutes enhance thrombosis potential in the host.mBio2023
37352836Strain dropouts reveal interactions that govern the metabolic output of the gut microbiome.Cell2023
37053311Engineered skin bacteria induce antitumor T cell responses against melanoma.Science2023
37342006Atlas of gut microbe-derived products from aromatic amino acids and risk of cardiovascular morbidity and mortality.Eur Heart J2023
36753629A Limited Effect of Chronic Renal Insufficiency on the Colon Microbiome.J Am Soc Nephrol2023
36720857Host-microbe co-metabolism via MCAD generates circulating metabolites including hippuric acid.Nat Commun2023
36549300Two distinct gut microbial pathways contribute to meta-organismal production of phenylacetylglutamine with links to cardiovascular disease.Cell Host Microbe2023
35165440A gut-derived metabolite alters brain activity and anxiety behaviour in mice.Nature2022
35643079Impact of a 7-day homogeneous diet on interpersonal variation in human gut microbiomes and metabolomes.Cell Host Microbe2022
36070752Design, construction, and in vivo augmentation of a complex gut microbiome.Cell2022
36103821Gut commensal bacteria enhance pathogenesis of a tumorigenic murine retrovirus.Cell Rep2022
36184180Bacteroides thetaiotaomicron rough-type lipopolysaccharide: The chemical structure and the immunological activity.Carbohydr Polym2022
33440171Role of dietary fiber in the recovery of the human gut microbiome and its metabolome.Cell Host Microbe2021
33904395CRISPR-based functional genomics in human dendritic cells.Elife2021
33821247A method for detection of SARS-CoV-2 RNA in healthy human stool: a validation study.Lancet Microbe2021
34581602BiG-MAP: an Automated Pipeline To Profile Metabolic Gene Cluster Abundance and Expression in Microbiomes.mSystems2021
34019648The gutSMASH web server: automated identification of primary metabolic gene clusters from the gut microbiota.Nucleic Acids Res2021
34325466Novel bile acid biosynthetic pathways are enriched in the microbiome of centenarians.Nature2021
34262212A metabolomics pipeline for the mechanistic interrogation of the gut microbiome.Nature2021
34168315Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome.Nat Microbiol2021
34166614Endogenous retroviruses promote homeostatic and inflammatory responses to the microbiota.Cell2021
34139173Gut microbes impact stroke severity via the trimethylamine N-oxide pathway.Cell Host Microbe2021
32298574Characterization of Serine Hydrolases Across Clinical Isolates of Commensal Skin Bacteria <i>Staphylococcus epidermidis</i> Using Activity-Based Protein Profiling.ACS Infect Dis2020
32101703Dysbiosis-Induced Secondary Bile Acid Deficiency Promotes Intestinal Inflammation.Cell Host Microbe2020
31818878Quantification of bile acids: a mass spectrometry platform for studying gut microbe connection to metabolic diseases.J Lipid Res2020
33031771Recovery of the Gut Microbiota after Antibiotics Depends on Host Diet, Community Context, and Environmental Reservoirs.Cell Host Microbe2020
33077598<i>Bifidobacterium</i> alters the gut microbiota and modulates the functional metabolism of T regulatory cells in the context of immune checkpoint blockade.Proc Natl Acad Sci U S A2020
33299969Bacterially Derived Tryptamine Increases Mucus Release by Activating a Host Receptor in a Mouse Model of Inflammatory Bowel Disease.iScience2020
33208503A <i>Cutibacterium acnes</i> antibiotic modulates human skin microbiota composition in hair follicles.Sci Transl Med2020
33351797Expansion of RiPP biosynthetic space through integration of pan-genomics and machine learning uncovers a novel class of lanthipeptides.PLoS Biol2020
32555455A metabolic pathway for bile acid dehydroxylation by the gut microbiome.Nature2020
32416747Computational genomic discovery of diverse gene clusters harbouring Fe-S flavoenzymes in anaerobic gut microbiota.Microb Genom2020
32142679A Cardiovascular Disease-Linked Gut Microbial Metabolite Acts via Adrenergic Receptors.Cell2020
31649166MAIT cells are imprinted by the microbiota in early life and promote tissue repair.Science2019
31726029Recovery of the Gut Microbiota after Antibiotics Depends on Host Diet, Community Context, and Environmental Reservoirs.Cell Host Microbe2019
31831639Depletion of microbiome-derived molecules in the host using <i>Clostridium</i> genetics.Science2019
29480720A Pressure Test to Make 10 Molecules in 90 Days: External Evaluation of Methods to Engineer Biology.J Am Chem Soc2018
30096310Microbiome: Focus on Causation and Mechanism.Cell2018
29902441Gut Microbiota-Produced Tryptamine Activates an Epithelial G-Protein-Coupled Receptor to Increase Colonic Secretion.Cell Host Microbe2018
30033366Mapping the Genetic Landscape of Human Cells.Cell2018
30359185Microbial Transplantation With Human Gut Commensals Containing CutC Is Sufficient to Transmit Enhanced Platelet Reactivity and Thrombosis Potential.Circ Res2018
29364286Skin microbiota-host interactions.Nature2018
29382696Contextual control of skin immunity and inflammation by <i>Corynebacterium</i>.J Exp Med2018
29565366Erratum: Skin microbiota-host interactions.Nature2018
29535205The Biosynthesis of Lipooligosaccharide from <i>Bacteroides thetaiotaomicron</i>.mBio2018
29168502A gut bacterial pathway metabolizes aromatic amino acids into nine circulating metabolites.Nature2017
28111075Discovery of Reactive Microbiota-Derived Metabolites that Inhibit Host Proteases.Cell2017
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Collaborators

Justin L Sonnenburg
Stanford University
Co-authored papers 19
Jon Clardy
Harvard Medical School, Blavatnik Institute
Co-authored papers 14
Marnix H Medema
Wageningen University
Co-authored papers 13
David R Liu
Co-authored papers 9
Peter Cimermancic
Verily Life Sciences LLC
Co-authored papers 8
Pieter C Dorrestein
Co-authored papers 7
Jan Claesen
Lerner Research Institute of the Cleveland Clinic
Co-authored papers 7
Eriko Takano
Manchester Institute of Biotechnology, University of Manchester
Co-authored papers 6
Yasmine Belkaid
National Institute of Allergy and Infectious Diseases
Co-authored papers 6
Laura C Wieland Brown
Indiana University
Co-authored papers 5
Roger G Linington
Simon Fraser University
Co-authored papers 4
Kai Blin
Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark
Co-authored papers 4
Nicolas Bouladoux
National Institute of Allergy and Infectious Diseases
Co-authored papers 3
Kerwyn Casey Huang
Stanford University, Stanford University School of Medicine
Co-authored papers 3
Amrita Pati
Department of Energy (DOE) Joint Genome Institute
Co-authored papers 3
Katherine S Pollard
Gladstone Institutes
Co-authored papers 3
Nikos C Kyrpides
Co-authored papers 3
William H Gerwick
Scripps Institution of Oceanography, University of California San Diego
Co-authored papers 3
Andrej Sali (CM4AI)
University of California San Francisco
Co-authored papers 2
Jonathan S Weissman
Whitehead Institute for Biomedical Research
Co-authored papers 2
Samira Tamoutounour
National Institute of Allergy and Infectious Diseases
Co-authored papers 2
Norma Neff
Stanford University
Co-authored papers 2
Tina M Cowan
Clinical Biochemical Genetics Laboratory
Co-authored papers 2
Seong-Ji Han
National Institute of Allergy and Infectious Diseases
Co-authored papers 2
Gilles P van Wezel
Institute of Biology, Leiden University
Co-authored papers 2
Kyle Bittinger
Children's Hospital of Philadelphia
Co-authored papers 2
Ramnik J Xavier
Broad Institute of MIT and Harvard
Co-authored papers 2
Kenji L Kurita
Small Molecule Pharmaceutical Sciences, Genentech Inc.
Co-authored papers 2
Allyson L Byrd
Genentech Inc.
Co-authored papers 2
Gianrico Farrugia
Mayo Clinic Gastroenterology and Hepatology, Mayo Clinic
Co-authored papers 2
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