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Author Details

Augustin Luna
Harvard Medical School
2006
57
25
PMIDPaper TitleJournal TitlePublished Year
36897014StonPy: a tool to parse and query collections of SBGN maps in a graph database.Bioinformatics2023
37555633COVIDpro: Database for Mining Protein Dysregulation in Patients with COVID-19.J Proteome Res2023
37585474cyjShiny: A cytoscape.js R Shiny Widget for network visualization and analysis.PLoS One2023
37343696Proteomic Dynamics of Breast Cancer Cell Lines Identifies Potential Therapeutic Protein Targets.Mol Cell Proteomics2023
37106127Mapping the functional interactions at the tumor-immune checkpoint interface.Commun Biol2023
37140427CellMinerCDB: NCATS Is a Web-Based Portal Integrating Public Cancer Cell Line Databases for Pharmacogenomic Explorations.Cancer Res2023
36203550COVIDpro: Database for mining protein dysregulation in patients with COVID-19.bioRxiv2022
35412613Precision Combination Therapies Based on Recurrent Oncogenic Coalterations.Cancer Discov2022
33196823CellMiner Cross-Database (CellMinerCDB) version 1.2: Exploration of patient-derived cancer cell line pharmacogenomics.Nucleic Acids Res2021
35475239A pan-cancer survey of cell line tumor similarity by feature-weighted molecular profiles.Cell Rep Methods2021
34860157Author-sourced capture of pathway knowledge in computable form using Biofactoid.Elife2021
34939300COVID-19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms.Mol Syst Biol2021
34877547Analyzing causal relationships in proteomic profiles using CausalPath.STAR Protoc2021
34664389COVID19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms.Mol Syst Biol2021
34098590Synthetic biology open language visual (SBOL Visual) version 2.3.J Integr Bioinform2021
33373583CellBox: Interpretable Machine Learning for Perturbation Biology with Application to the Design of Cancer Combination Therapy.Cell Syst2021
32568733Systems biology graphical notation markup language (SBGNML) version 0.3.J Integr Bioinform2020
31647099Pathway Commons 2019 Update: integration, analysis and exploration of pathway data.Nucleic Acids Res2020
33086069SCLC-CellMiner: A Resource for Small Cell Lung Cancer Cell Line Genomics and Pharmacology Based on Genomic Signatures.Cell Rep2020
33137091netboxr: Automated discovery of biological process modules by network analysis in R.PLoS One2020
32543457Synthetic biology open language visual (SBOL visual) version 2.2.J Integr Bioinform2020
30996345LLGL2 rescues nutrient stress by promoting leucine uptake in ER<sup>+</sup> breast cancer.Nature2019
31733513Quantitative Proteome Landscape of the NCI-60 Cancer Cell Lines.iScience2019
31348656Communicating Structure and Function in Synthetic Biology Diagrams.ACS Synth Biol2019
31199768Synthetic Biology Open Language Visual (SBOL Visual) Version 2.1.J Integr Bioinform2019
31199769Systems Biology Graphical Notation: Process Description language Level 1 Version 2.0.J Integr Bioinform2019
29396322A Landscape of Metabolic Variation across Tumor Types.Cell Syst2018
30553813CellMinerCDB for Integrative Cross-Database Genomics and Pharmacogenomics Analyses of Cancer Cell Lines.iScience2018
29617658Machine Learning Detects Pan-cancer Ras Pathway Activation in The Cancer Genome Atlas.Cell Rep2018
29549707Synthetic Biology Open Language Visual (SBOL Visual) Version 2.0.J Integr Bioinform2018
29625050Oncogenic Signaling Pathways in The Cancer Genome Atlas.Cell2018
27923837The NCI-60 Methylome and Its Integration into CellMiner.Cancer Res2017
28249590Erratum to: Tumor immune microenvironment characterization in clear cell renal cell carcinoma identifies prognostic and immunotherapeutically relevant messenger RNA signatures.Genome Biol2017
26766592An Integrated Metabolic Atlas of Clear Cell Renal Cell Carcinoma.Cancer Cell2016
26420780The digital revolution in phenotyping.Brief Bioinform2016
26635141rcellminer: exploring molecular profiles and drug response of the NCI-60 cell lines in R.Bioinformatics2016
27855702Tumor immune microenvironment characterization in clear cell renal cell carcinoma identifies prognostic and immunotherapeutically relevant messenger RNA signatures.Genome Biol2016
26685306PaxtoolsR: pathway analysis in R using Pathway Commons.Bioinformatics2016
25213708Using drug response data to identify molecular effectors, and molecular "omic" data to identify candidate drugs in cancer.Hum Genet2015
26528563Systems Biology Graphical Notation: Activity Flow language Level 1 Version 1.2.J Integr Bioinform2015
26528562Systems Biology Graphical Notation: Entity Relationship language Level 1 Version 2.J Integr Bioinform2015
26020938Predicted Role of NAD Utilization in the Control of Circadian Rhythms during DNA Damage Response.PLoS Comput Biol2015
25758781Alterations of DNA repair genes in the NCI-60 cell lines and their predictive value for anticancer drug activity.DNA Repair (Amst)2015
23547033PathVisio-Faceted Search: an exploration tool for multi-dimensional navigation of large pathways.Bioinformatics2013
24360018SIRT1/PARP1 crosstalk: connecting DNA damage and metabolism.Genome Integr2013
22199389PathVisio-Validator: a rule-based validation plugin for graphical pathway notations.Bioinformatics2012
22581176Software support for SBGN maps: SBGN-ML and LibSBGN.Bioinformatics2012
22570691Gene expression profiles of the NCI-60 human tumor cell lines define molecular interaction networks governing cell migration processes.PLoS One2012
21636591PathVisio-MIM: PathVisio plugin for creating and editing Molecular Interaction Maps (MIMs).Bioinformatics2011
21586134A formal MIM specification and tools for the common exchange of MIM diagrams: an XML-Based format, an API, and a validation method.BMC Bioinformatics2011
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Collaborators

Chris Sander
Broad Institute of MIT and Harvard
Co-authored papers 27
Kurt W Kohn
Center for Cancer Research, National Cancer Institute
Co-authored papers 12
William C Reinhold
Center for Cancer Research, National Cancer Institute
Co-authored papers 11
Emek Demir
Knight Cancer Institute, Oregon Health & Science University
Co-authored papers 11
Mirit I Aladjem
National Cancer Institute, Center for Cancer Research
Co-authored papers 11
Yves Pommier
Center for Cancer Research, National Cancer Institute
Co-authored papers 11
Vinodh N Rajapakse
Co-authored papers 9
Sudhir Varma
Center for Cancer Research, National Cancer Institute
Co-authored papers 9
Nicolas Le Nov??re
Babraham Institute
Co-authored papers 9
Ugur Dogrusoz
Bilkent University
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Ozgun Babur
Houston Methodist Research Institute
Co-authored papers 6
Matthew Pocock
Newcastle University
Co-authored papers 5
Robin Haw
Ontario Institute for Cancer Research
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Margot Sunshine
Center for Cancer Research, National Cancer Institute, National Institutes of Health
Co-authored papers 5
Kevin Clancy
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Fathi Elloumi
Inc., Frederick National Laboratory for Cancer Research
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Huaiyu Mi
University of Southern California
Co-authored papers 5
Laurence Calzone
Institut Curie, Universite PSL
Co-authored papers 4
Fabricio G Sousa
Universidade Federal De Mato Grosso Do Sul
Co-authored papers 4
Daniel R Weinberger
Co-authored papers 4
Julio Saez-Rodriguez
Institute of Computational Biomedicine, Heidelberg University
Co-authored papers 4
Bülent Arman Aksoy
Co-authored papers 4
Abraham Ari Hakimi
Co-authored papers 4
Nikolaus Schultz
Memorial Sloan Kettering Cancer Center
Co-authored papers 4
Hiroaki Kitano
Co-authored papers 4
James J Hsieh
Washington University
Co-authored papers 3
Tom C Freeman
The Roslin Institute, University of Edinburgh
Co-authored papers 3
Konnor La
The Rockefeller University
Co-authored papers 3
Richard E Straub
Lieber Institute for Brain Development
Co-authored papers 3
William Lee
Co-authored papers 3
Release 1.2