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Author Details

Raoul J P Bonnal
National Institute for Molecular Genetics "Romeo ed Enrica Invernizzi"
2006
42
21
PMIDPaper TitleJournal TitlePublished Year
36653901Eomesodermin-expressing type 1 regulatory (EOMES<sup>+</sup> Tr1)-like T cells: Basic biology and role in immune-mediated diseases.Eur J Immunol2023
34845371Single cell-derived spheroids capture the self-renewing subpopulations of metastatic ovarian cancer.Cell Death Differ2022
33958447The coding and long noncoding single-cell atlas of the developing human fetal striatum.Science2021
33718327A Simplified Amino Acidic Alphabet to Unveil the T-Cells Receptors Antigens: A Computational Perspective.Front Chem2021
33879786Epigenomic landscape of human colorectal cancer unveils an aberrant core of pan-cancer enhancers orchestrated by YAP/TAZ.Nat Commun2021
34508139Novel interferon-sensitive genes unveiled by correlation-driven gene selection and systems biology.Sci Rep2021
34593964Publisher Correction: Novel interferon-sensitive genes unveiled by correlation-driven gene selection and systems biology.Sci Rep2021
34017124Clonally expanded EOMES<sup>+</sup> Tr1-like cells in primary and metastatic tumors are associated with disease progression.Nat Immunol2021
32313927OligoMinerApp: a web-server application for the design of genome-scale oligonucleotide in situ hybridization probes through the flexible OligoMiner environment.Nucleic Acids Res2020
32308977BioHackathon 2015: Semantics of data for life sciences and reproducible research.F1000Res2020
31278684Sharing Programming Resources Between Bio* Projects.Methods Mol Biol2019
27787801Next-Generation Sequencing Analysis of Long Noncoding RNAs in CD4+ T Cell Differentiation.Methods Mol Biol2017
29133396Repression of miR-31 by BCL6 stabilizes the helper function of human follicular helper T cells.Proc Natl Acad Sci U S A2017
27296299FALDO: a semantic standard for describing the location of nucleotide and protein feature annotation.J Biomed Semantics2016
27851914Transcriptional Landscape of Human Tissue Lymphocytes Unveils Uniqueness of Tumor-Infiltrating T Regulatory Cells.Immunity2016
27659980Analysis RNA-seq and Noncoding RNA.Methods Mol Biol2016
25621826The long intergenic noncoding RNA landscape of human lymphocytes highlights the regulation of T cell differentiation by linc-MAF-4.Nat Immunol2015
26451251De novo transcriptome profiling of highly purified human lymphocytes primary cells.Sci Data2015
25897123miRiadne: a web tool for consistent integration of miRNA nomenclature.Nucleic Acids Res2015
24495517BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains.J Biomed Semantics2014
25472764Community-driven development for computational biology at Sprints, Hackathons and Codefests.BMC Bioinformatics2014
23550640Role of microRNAs and long-non-coding RNAs in CD4(+) T-cell differentiation.Immunol Rev2013
23398680The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies.J Biomed Semantics2013
22332238Biogem: an effective tool-based approach for scaling up open source software development in bioinformatics.Bioinformatics2012
22997428Identification of new autoantigens by protein array indicates a role for IL4 neutralization in autoimmune hepatitis.Mol Cell Proteomics2012
22994508The Ruby UCSC API: accessing the UCSC genome database using Ruby.BMC Bioinformatics2012
22640879Bio-samtools: Ruby bindings for SAMtools, a library for accessing BAM files containing high-throughput sequence alignments.Source Code Biol Med2012
21284853Complete genome sequence of a serotype 11A, ST62 Streptococcus pneumoniae invasive isolate.BMC Microbiol2011
21806842The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications.J Biomed Semantics2011
21706005Distinct microRNA signatures in human lymphocyte subsets and enforcement of the naive state in CD4+ T cells by the microRNA miR-125b.Nat Immunol2011
20072618Characterization of nucleotide misincorporation patterns in the iceman's mitochondrial DNA.PLoS One2010
20727200The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. The DBCLS BioHackathon Consortium*.J Biomed Semantics2010
20739307BioRuby: bioinformatics software for the Ruby programming language.Bioinformatics2010
20478831RSSsite: a reference database and prediction tool for the identification of cryptic Recombination Signal Sequences in human and murine genomes.Nucleic Acids Res2010
20670611Reliable resequencing of the human dystrophin locus by universal long polymerase chain reaction and massive pyrosequencing.Anal Biochem2010
19379481A transcriptional sketch of a primary human breast cancer by 454 deep sequencing.BMC Genomics2009
18411315Whole-genome pyrosequencing of an epidemic multidrug-resistant Acinetobacter baumannii strain belonging to the European clone II group.Antimicrob Agents Chemother2008
18842124Evaluation of human gene variant detection in amplicon pools by the GS-FLX parallel Pyrosequencer.BMC Genomics2008
18976917Complete mitochondrial genome sequence of the Tyrolean Iceman.Curr Biol2008
17430567Data handling strategies for high throughput pyrosequencers.BMC Bioinformatics2007
18039355Complete gene expression profiling of Saccharopolyspora erythraea using GeneChip DNA microarrays.Microb Cell Fact2007
16624241Strategies for comparing gene expression profiles from different microarray platforms: application to a case-control experiment.Anal Biochem2006
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Collaborators

Toshiaki Katayama
Database Center for Life Science
Co-authored papers 11
Pjotr Prins
Wageningen University & Research
Co-authored papers 8
Jan Aerts
Co-authored papers 7
Rutger A Vos
Naturalis Biodiversity Center
Co-authored papers 6
Yasunori Yamamoto
Database Center for Life Science, Joint Support-Center for Data Science Research
Co-authored papers 5
Mark D Wilkinson
Universidad Politecnica de Madrid (UPM)
Co-authored papers 5
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Co-authored papers 5
Soichi Ogishima
Tohoku University Graduate School of Medicine
Co-authored papers 4
Takatomo Fujisawa
National Institute of Genetics
Co-authored papers 4
Michele Iacono
Co-authored papers 4
Jerven Bolleman
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Francesco Strozzi
Fondazione Parco Tecnologico Padano
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Peter J A Cock
James Hutton Institute
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Bruno Aranda
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Keiichiro Ono
university of california san diego
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Kozo Nishida
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Michel Dumontier
Institute of Data Science, Maastricht University
Co-authored papers 3
Chisato Yamasaki
Osaka University
Co-authored papers 3
Erick Antezana
Norwegian University of Science and Technology
Co-authored papers 3
Christian M Zmasek
J. Craig Venter Institute
Co-authored papers 3
Robert Hoehndorf
King Abdullah University of Science and Technology
Co-authored papers 3
Luciano Milanesi
Institute of Biomedical Technologies - National Research Council of Italy
Co-authored papers 3
Martin Senger
DKFZ - German Cancer Research Center
Co-authored papers 2
Lara Manganaro
National Institute of Molecular Genetics, "Fondazione Romeo ed Enrica Invernizzi"
Co-authored papers 2
Hidemasa Bono
Hiroshima University
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Richard Holland
Eagle Genomics Ltd
Co-authored papers 2
René Ranzinger
Co-authored papers 2
Mat???? Kala??
University of Bergen
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Release 1.2