Author details

Full Name

David M Gilbert

Affiliation

ORCID

Career Start Year

1986

Papers

173

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37419111	Spatial and temporal organization of the genome: Current state and future aims of the 4D nucleome project.	Mol Cell	2023
37662334	Transcription-Replication Conflict Shapes DNA Break Dynamics.		2023
36905782	Replication timing and transcriptional control: beyond cause and effectÂ -Â part IV.		2023
36959507	SARS-CoV-2 restructures host chromatin architecture.		2023
37041325	Replication licensing during S phase: breaking the law to prevent breaking DNA.		2023
34986273	Mapping Replication Timing in Single Mammalian Cells.	Current Protocols	2022
36245428	Dynamic chromosomal interactions and control of heterochromatin positioning by Ki-67.	EMBO Rep	2022
36273230	Epigenetic control of chromosome-associated lncRNA genes essential for replication and stability.	Nat Commun	2022
35474001	Author Correction: Expanded encyclopaedias of DNA elements in the human and mouse genomes.	Nature	2022
35165532	STATISTICAL COMPARISONS OF CHROMOSOMAL SHAPE POPULATIONS.	Proceedings - International Symposium on Biomedical Imaging	2021
34006872	Nuclear organisation and replication timing are coupled through RIF1-PP1 interaction.	Nature Communications	2021
33468678	The Tiger Rattlesnake genome reveals a complex genotype underlying a simple venom phenotype.	Proceedings of the National Academy of Sciences of the United States of America	2021
34157308	Genome-wide mapping of human DNA replication by optical replication mapping supports a stochastic model of eukaryotic replication.	Mol Cell	2021
33888635	Replication timing maintains the global epigenetic state in human cells.	Science	2021
33876948	Catalytically Enhanced Cas9 through Directed Protein Evolution.	CRISPR Journal	2021
33558366	Mammalian DNA Replication Timing.	Cold Spring Harbor perspectives in biology	2021
33446254	SPIN reveals genome-wide landscape of nuclear compartmentalization.	Genome Biol	2021
34783858	High-throughput single-cell epigenomic profiling by targeted insertion of promoters (TIP-seq).	J Cell Biol	2021
32728046	An integrative ENCODE resource for cancer genomics.	Nat Commun	2020
32080885	Local rewiring of genome-nuclear lamina interactions by transcription.	EMBO J	2020
32220303	4D Genome Rewiring during Oncogene-Induced and Replicative Senescence.	Mol Cell	2020
32209126	High-resolution Repli-Seq defines the temporal choreography of initiation, elongation and termination of replication in mammalian cells.		2020
33262376	Cohesin depleted cells rebuild functional nuclear compartments after endomitosis.	Nature Communications	2020
32534757	Pulsed-ozonolysis assisted oxidative treatment of forestry biomass for lignin fractionation.	Bioresource Technology	2020
32680994	3D genome organization contributes to genome instability at fragile sites.	Nature Communications	2020
32728249	Expanded encyclopaedias of DNA elements in the human and mouse genomes.	Nature	2020
31375586	Zika Virus Infection Induces DNA Damage Response in Human Neural Progenitors That Enhances Viral Replication.	J Virol	2019
31698451	Replication timing alterations in leukemia affect clinically relevant chromosome domains.	Blood Adv	2019
30595451	Identifying cis Elements for Spatiotemporal Control of Mammalian DNA Replication.	Cell	2019
30475980	RT States: systematic annotation of the human genome using cell type-specific replication timing programs.	Bioinformatics	2019
31231024	Rapid Irreversible Transcriptional Reprogramming in Human Stem Cells Accompanied by Discordance between Replication Timing and Chromatin Compartment.	Stem Cell Reports	2019
31477886	Control of DNA replication timing in the 3D genome.	Nature Reviews Molecular Cell Biology	2019
31434679	Replication timing networks reveal a link between transcription regulatory circuits and replication timing control.	Genome Research	2019
29735606	Allele-specific control of replication timing and genome organization during development.	Genome Research	2018
29936186	Continuous-Trait Probabilistic Model for Comparing Multi-species Functional Genomic Data.	Cell Systems	2018
30202056	Integrative detection and analysis of structural variation in cancer genomes.	Nat Genet	2018
29963964	Cellular senescence induces replication stress with almost no affect on DNA replication timing.	Cell Cycle	2018
29382831	Single-cell replication profiling to measure stochastic variation in mammalian replication timing.	Nature Communications	2018
29294101	Bacterial artificial chromosomes establish replication timing and sub-nuclear compartment de novo as extra-chromosomal vectors.	Nucleic Acids Research	2018
29599440	Genome-wide analysis of replication timing by next-generation sequencing with E/L Repli-seq.		2018
28257138	Unearthing worm replication origins.	Nature Structural and Molecular Biology	2017
28433605	Stability of patient-specific features of altered DNA replication timing in xenografts of primary human acute lymphoblastic leukemia.	Exp Hematol	2017
29357061	Replication Domains: Genome Compartmentalization into Functional Replication Units.	Advances in Experimental Medicine and Biology	2017
29196523	DNA replication timing alterations identify common markers between distinct progeroid diseases.	Proc Natl Acad Sci U S A	2017
27115331	Replication timing and transcriptional control: beyond cause and effect-part III.	Current Opinion in Cell Biology	2016
26935587	Influence of ATM-Mediated DNA Damage Response on Genomic Variation in Human Induced Pluripotent Stem Cells.		2016
27433885	Spatio-temporal re-organization of replication foci accompanies replication domain consolidation during human pluripotent stem cell lineage specification.	Cell Cycle	2016
26725008	Nuclear Architecture Organized by Rif1 Underpins the Replication-Timing Program.	Mol Cell	2016
27259206	Replicating Large Genomes: Divide and Conquer.	Molecular Cell	2016
26587014	Computing interaction probabilities in signaling networks.	Eurasip Journal on Bioinformatics and Systems Biology	2015