Author details

Full Name

Michael Brudno

Affiliation

University of Toronto

ORCID

Career Start Year

2000

Papers

135

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36166535	ChartWalk: Navigating large collections of text notes in electronic health records for clinical chart review.	IEEE Trans Vis Comput Graph	2023
37748705	Clinical Implementation of MetaFusion for Accurate Cancer-Driving Fusion Detection from RNA Sequencing.	J Mol Diagn	2023
37287484	The promises and challenges of clinical AI in community paediatric medicine.	Paediatr Child Health	2023
36990084	Trio RNA sequencing in a cohort of medically complex children.	Am J Hum Genet	2023
37073374	COVID-19 vaccine antibody responses in community-dwelling adults to 48Â weeks post primary vaccine series.	iScience	2023
37336547	Conserved transcriptional programming across sex and species after peripheral nerve injury predicts treatments for neuropathic pain.	Br J Pharmacol	2023
37202401	Developing OCHROdb, a comprehensive quality checked database of open chromatin regions from sequencing data.	Sci Rep	2023
36585784	Evaluation of single-cell RNAseq labelling algorithms using cancer datasets.	Brief Bioinform	2023
35165961	PhenomeCentral: 7 years of rare disease matchmaking.	Hum Mutat	2022
36420149	Evaluation of single-cell RNA-seq clustering algorithms on cancer tumor datasets.	Comput Struct Biotechnol J	2022
36332610	Care4Rare Canada: Outcomes from a decade of network science for rare disease gene discovery.	Am J Hum Genet	2022
35102191	Splicing is an alternate oncogenic pathway activation mechanism in glioma.	Nat Commun	2022
35181971	Genomics4RD: An integrated platform to share Canadian deep-phenotype and multiomic data for international rare disease gene discovery.	Hum Mutat	2022
35087180	PhenoPad: Building AI enabled note-taking interfaces for patient encounters.	NPJ Digit Med	2022
35294539	Assessment of Machine Learning-Based Medical Directives to Expedite Care in Pediatric Emergency Medicine.	JAMA Netw Open	2022
33397769	A Cross-Sectional Study of Nemaline Myopathy.	Neurology	2021
36778585	CanDIG: Federated network across Canada for multi-omic and health data discovery and analysis.	Cell Genom	2021
33592074	Prospective observational study and serosurvey of SARS-CoV-2 infection in asymptomatic healthcare workers at a Canadian tertiary care center.	PLoS One	2021
35128509	International federation of genomic medicine databases using GA4GH standards.	Cell Genom	2021
35072136	GA4GH: International policies and standards for data sharing across genomic research and healthcare.	Cell Genom	2021
34820133	A Canadian Study of Cisplatin Metabolomics and Nephrotoxicity (ACCENT): A Clinical Research Protocol.	Can J Kidney Health Dis	2021
34493718	Automatically disambiguating medical acronyms with ontology-aware deep learning.	Nat Commun	2021
34667013	Creation of an electronic patient-reported outcome measure platform Voxe: a mixed methods study protocol in paediatric solid organ transplantation.	BMJ Open	2021
34016710	Child Neurology: RNA Sequencing for the Diagnosis of Lissencephaly.	Neurology	2021
33944895	MetaFusion: a high-confidence metacaller for filtering and prioritizing RNA-seq gene fusion candidates.	Bioinformatics	2021
32366968	Phenotate: crowdsourcing phenotype annotations as exercises in undergraduate classes.	Genet Med	2020
33644412	Essential requirements for establishing and operating data trusts: practical guidance co-developed by representatives from fifteen canadian organizations and initiatives.	Int J Popul Data Sci	2020
32084423	Prevalence and Clinical Features of Inflammatory Bowel Diseases Associated With Monogenic Variants, Identified by Whole-Exome Sequencing in 1000 Children at a Single Center.	Gastroenterology	2020
32799817	Obsessive-compulsive disorder and attention-deficit/hyperactivity disorder: distinct associations with DNA methylation and genetic variation.	J Neurodev Disord	2020
32623772	EpigenCentral: Portal for DNA methylation data analysis and classification in rare diseases.	Hum Mutat	2020
32341096	Structural Variant in Mitochondrial-Associated Gene (MRPL3) Induces Adult-Onset Neurodegeneration with Memory Impairment in the Mouse.	J Neurosci	2020
32555415	Correction: Phenotate: crowdsourcing phenotype annotations as exercises in undergraduate classes.	Genet Med	2020
32479601	CReSCENT: CanceR Single Cell ExpressioN Toolkit.	Nucleic Acids Res	2020
30476213	Expansion of the Human Phenotype Ontology (HPO) knowledge base and resources.	Nucleic Acids Res	2019
31875540	Control of Long-Term Synaptic Potentiation and Learning by Alternative Splicing of the NMDA Receptor Subunit GluN1.	Cell Rep	2019
31639040	Correction to: DNA methylation signature is prognostic of choroid plexus tumor aggressiveness.	Clin Epigenetics	2019
31409384	DNA methylation signature is prognostic of choroid plexus tumor aggressiveness.	Clin Epigenetics	2019
31288860	New insights into DNA methylation signatures: SMARCA2 variants in Nicolaides-Baraitser syndrome.	BMC Med Genomics	2019
31125434	Extract and component-specific sensitization patterns in Canadian moderate-to-severe preschool asthmatics.	Allergy	2019
31094361	Identifying Clinical Terms in Medical Text Using Ontology-Guided Machine Learning.	JMIR Med Inform	2019
30827497	Expanding the Boundaries of RNA Sequencing as a Diagnostic Tool for Rare Mendelian Disease.	Am J Hum Genet	2019
30821575	Don't brush off buccal data heterogeneity.	Epigenetics	2019
31051109	Expanding the Boundaries of RNA Sequencing as a Diagnostic Tool for Rare Mendelian Disease.	Am J Hum Genet	2019
28866570	PhenoLines: Phenotype Comparison Visualizations for Disease Subtyping via Topic Models.	IEEE Trans Vis Comput Graph	2018
30069064	Registered access: authorizing data access.	Eur J Hum Genet	2018
30136959	Doccurate: A Curation-Based Approach for Clinical Text Visualization.	IEEE Trans Vis Comput Graph	2018
30451841	Tamoxifen therapy in a murine model of myotubular myopathy.	Nat Commun	2018
29425702	Harmonising phenomics information for a better interoperability in the rare disease field.	Eur J Med Genet	2018
27514055	PhenoStacks: Cross-Sectional Cohort Phenotype Comparison Visualizations.	IEEE Trans Vis Comput Graph	2017
28475860	CHARGE and Kabuki Syndromes: Gene-Specific DNA Methylation Signatures Identify Epigenetic Mechanisms Linking These Clinically Overlapping Conditions.	Am J Hum Genet	2017

1 - 50 of 135

Ben Weisburd

Broad Institute of MIT and Harvard

Career Start Year 2012

Number of shared co-authors 20

Fritz J Sedlazeck

Baylor College of Medicine

Career Start Year 2012

Number of shared co-authors 17

Ryan M Layer

Boulder and BioFrontiers Institute, University of Colorado Boulder

Career Start Year 2011

Number of shared co-authors 1

Manuel Holtgrewe

Berlin Institute of Health

Career Start Year 2011

Number of shared co-authors 18

Marten J??ger

Charite Universitatsmedizin Berlin

Career Start Year 2010

Number of shared co-authors 20

Jeroen F J Laros

National Institute for Public Health and the Environment

Career Start Year 2009

Number of shared co-authors 15

Martin Kircher

Berlin Institute of Health (BIH) at Charite-Universitatsmedizin Berlin

Career Start Year 2008

Number of shared co-authors 17

Tobias Rausch

University of Heidelberg

Career Start Year 2008

Number of shared co-authors 31

Aakrosh Ratan

Center for Public Health Genomics, University of Virginia

Career Start Year 2008

Number of shared co-authors 18

Aaron R Quinlan

University of Utah

Career Start Year 2007

Number of shared co-authors 8

Jeffrey G Reid

Regeneron Pharmaceuticals, Inc.

Career Start Year 2007

Number of shared co-authors 29

Daniel R Zerbino

European Bioinformatics Institute

Career Start Year 2005

Number of shared co-authors 21

Michael C Schatz

Johns Hopkins University

Career Start Year 2004

Number of shared co-authors 33

Vikas Bansal

University of California San Diego

Career Start Year 2004

Number of shared co-authors 6

Lachlan J M Coin

The Peter Doherty Institute for Infection and Immunity, The University of Melbourne

Career Start Year 2003

Number of shared co-authors 21

Christie L Kovar

Baylor College of Medicine

Career Start Year 2002

Number of shared co-authors 58

Timo Lassmann

Telethon Kids Institute, University of Western Australia

Career Start Year 2002

Number of shared co-authors 31

Michael C Zody

Broad Institute of Harvard and MIT

Career Start Year 2001

Number of shared co-authors 66

Brent S Pedersen

Center for Molecular Medicine, University Medical Center Utrecht

Career Start Year 2001

Number of shared co-authors 2

Kai Wang

University of Pennsylvania

Career Start Year 2001

Number of shared co-authors 59

Suleyman Cenk Sahinalp

National Cancer Institute, National Institutes of Health

Career Start Year 2001

Number of shared co-authors 24

Nancy F Hansen

National Human Genome Research Institute, National Institutes of Health

Career Start Year 2000

Number of shared co-authors 50

Mark Diekhans

Genomics Institute, University of California Santa Cruz

Career Start Year 1999

Number of shared co-authors 60

Eric Banks

Broad Institute of MIT and Harvard

Career Start Year 1999

Number of shared co-authors 19

Vineet Bafna

University of California San Diego

Career Start Year 1998

Number of shared co-authors 33

Mark Yandell

University of Utah

Career Start Year 1994

Number of shared co-authors 67

Deanna M Church

Present address: Inscripta Inc.

Career Start Year 1992

Number of shared co-authors 66

Gustavo Glusman

Institute for Systems Biology

Career Start Year 1988

Number of shared co-authors 60

James C Mullikin

National Human Genome Research Institute, National Institutes of Health

Career Start Year 1985

Number of shared co-authors 102

Richard K Wilson

The Ohio State University

Career Start Year 1983

Number of shared co-authors 108

row(s) 1 - 30 of 30

Inna Dubchak

Lawrence Berkeley National Laboratory

Co-authored papers 14

Kym M Boycott

Children's Hospital of Eastern Ontario

Co-authored papers 13

Orion J Buske

The Hospital for Sick Children

Co-authored papers 13

Peter N Robinson

William Harvey Research Institute, Queen Mary University of London

Co-authored papers 13

Marta Girdea

DATA Team and Techna Institute, University Health Network

Co-authored papers 12

Marc Fiume

Ontario Institute for Cancer Research

Co-authored papers 11

Serafim Batzoglou

Co-authored papers 10

Melissa A Haendel

American Medical Informatics Association, Oregon Health and Science University, Oregon State University, University of Colorado Anschutz Medical Campus, University of North Carolina at Chapel Hill, University of Wisconsin-Madison

Co-authored papers 9

Melissa A Haendel

Co-authored papers 9

Cynthia Hawkins

The Hospital for Sick Children

Co-authored papers 9

Arend Sidow

Co-authored papers 8

Ana Rath

INSERM

Co-authored papers 7

Annie Olry

INSERM

Co-authored papers 7

Heidi L Rehm

The Broad Institute of MIT and Harvard

Co-authored papers 7

Bartha Maria Knoppers

McGill University

Co-authored papers 7

Christopher J Mungall

International Society for Biocuration, Lawrence Berkeley National Laboratory, University of Edinburgh, University of Edinburgh School of Biological Sciences

Co-authored papers 7

Taila Hartley

Children's Hospital of Eastern Ontario Research Institute

Co-authored papers 6

Stephanie O M Dyke

Montreal Neurological Institute, McGill University

Co-authored papers 6

Tudor Groza

Perth Children's Hospital

Co-authored papers 6

Sergiu Dumitriu

DATA Team and Techna Institute, University Health Network